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authorNavid Afkhami <navid.afkhami@mdc-berlin.de>2023-02-02 17:00:22 +0100
committerRicardo Wurmus <rekado@elephly.net>2023-02-03 11:34:42 +0100
commit89d76adf98e37ecef65cc71804df5b5fada8e774 (patch)
tree24b7e5ee2a4441db2b8f815bfddd958c97b3bb30
parentef879d7f40cdefc32718008d493c58c881273147 (diff)
gnu: Add python-pegasusio.
* gnu/packages/bioinformatics.scm (python-pegasusio): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8be8976a15..b8676b0ece 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1138,6 +1138,37 @@ protocol. It provides a simple and reliable way to retrieve genomic data from
servers supporting the protocol.")
(license license:asl2.0)))
+(define-public python-pegasusio
+ (package
+ (name "python-pegasusio")
+ (version "0.7.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "pegasusio" version))
+ (sha256
+ (base32
+ "0gqygspdy398vjymdy6756jmk99s7fhwav9rivdx59kpqjcdxaz9"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-anndata
+ python-docopt
+ python-h5py
+ python-importlib-metadata
+ python-loompy
+ python-natsort
+ python-numpy
+ python-pandas
+ python-pillow
+ python-scipy
+ python-zarr))
+ (native-inputs (list python-cython python-setuptools-scm))
+ (home-page "https://github.com/lilab-bcb/pegasusio")
+ (synopsis "Read or write single-cell genomics data")
+ (description
+ "Pegasusio is a Python package for reading or writing single-cell
+genomics data.")
+ (license license:bsd-3)))
+
(define-public python-phylophlan
(package
(name "python-phylophlan")