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| author | Ricardo Wurmus <rekado@elephly.net> | 2023-08-28 18:03:46 +0200 |
|---|---|---|
| committer | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2023-09-17 16:23:46 -0400 |
| commit | b88682b900253f1449c832040883fdd01196415e (patch) | |
| tree | 58dbd3fb529e9ac7bd3881d66a6fa492a26c814c | |
| parent | 49d5a105f3088bccd136fa9c1876b7a28dd7ddec (diff) | |
gnu: Add r-sesame.
* gnu/packages/bioconductor.scm (r-sesame): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b94c134b1b..706c38e6c9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9649,6 +9649,48 @@ sequence motif occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.") (license license:gpl3+))) +(define-public r-sesame + (package + (name "r-sesame") + (version "1.18.4") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "sesame" version)) + (sha256 + (base32 + "1il33ygys6y72l8p3fhx301q16w9kylfy6w92b64n8gqkn6dmsmn")))) + (properties `((upstream-name . "sesame"))) + (build-system r-build-system) + (propagated-inputs (list r-biocfilecache + r-biocparallel + r-dplyr + r-genomeinfodb + r-genomicranges + r-ggplot2 + r-illuminaio + r-iranges + r-mass + r-preprocesscore + r-readr + r-reshape2 + r-s4vectors + r-sesamedata + r-stringr + r-summarizedexperiment + r-tibble + r-wheatmap)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/zwdzwd/sesame") + (synopsis "Step-wise analysis of DNA Methylation BeadChips") + (description + "This package provides tools For analyzing Illumina Infinium DNA +methylation arrays. @code{SeSAMe} provides utilities to support analyses of +multiple generations of Infinium DNA methylation @code{BeadChips}, including +preprocessing, quality control, visualization and inference. @code{SeSAMe} +features accurate detection calling, intelligent inference of ethnicity, sex +and advanced quality control routines.") + (license license:expat))) + (define-public r-shinymethyl (package (name "r-shinymethyl") |