diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2023-06-02 11:31:40 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-06-02 11:34:17 +0200 |
| commit | bb27e3b8b13b4dbbb698b3ff5a4f6cf5793e9d5c (patch) | |
| tree | 37ff0b5af43cf918a72d3b40268f7277f0246477 | |
| parent | 341b4b2a97ad9937da319eaaba94c7aad2a10c19 (diff) | |
gnu: r-dismo: Replace bundled jars.
Fixes <https://issues.guix.gnu.org/63783>.
* gnu/packages/cran.scm (r-dismo)[source]: Delete bundled jars.
[inputs]: Add java-maxent.
[native-inputs]: Add JDK and zip.
[arguments]: Add phases 'build-jars and 'strip-jar-timestamps.
| -rw-r--r-- | gnu/packages/cran.scm | 31 |
1 files changed, 30 insertions, 1 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 67276f1b05..688621343e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -37368,11 +37368,40 @@ to archive and assign DOIs to data, software, figures, and more.") (uri (cran-uri "dismo" version)) (sha256 (base32 - "1msc75xnc9lbnn8pivd5j4jvb1b9p3xgybfm2ak2mpb2aplz5837")))) + "1msc75xnc9lbnn8pivd5j4jvb1b9p3xgybfm2ak2mpb2aplz5837")) + (snippet + '(for-each delete-file + (list "inst/java/dismo.jar" + "inst/java/maxent.jar"))))) (properties `((upstream-name . "dismo"))) (build-system r-build-system) + (arguments + (list + #:modules '((guix build utils) + (guix build r-build-system) + ((guix build ant-build-system) #:prefix java:)) + #:imported-modules + (cons '(guix build ant-build-system) + %r-build-system-modules) + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'build-jars + (lambda* (#:key inputs #:allow-other-keys) + (let ((maxent (search-input-file inputs + "/share/java/maxent/maxent.jar"))) + (install-file maxent "inst/java/") + (with-directory-excursion "java" + (invoke "javac" "-cp" maxent "mebridge.java") + (invoke "jar" "cvf" "../inst/java/dismo.jar" + "mebridge.class"))))) + (add-after 'install 'strip-jar-timestamps + (assoc-ref java:%standard-phases 'strip-jar-timestamps))))) + (inputs + (list java-maxent)) (propagated-inputs (list r-raster r-rcpp r-sp r-terra)) + (native-inputs + (list `(,icedtea-8 "jdk") zip)) (home-page "https://rspatial.org/raster/sdm/") (synopsis "Species distribution modeling") (description |