Merge branch 'master' into mesa-updates

Change-Id: I94c6874e5fdf916e3eb911f1a7df610cd3275474
author: John Kehayias <john.kehayias@protonmail.com> 2023-11-21 18:11:10 -0500
committer: John Kehayias <john.kehayias@protonmail.com> 2023-11-21 18:11:30 -0500
commit: 8d2a5a36af4c36dfa08c7ee75d7a06ebb7a8225a (patch)
tree: 0e0f0cc9d5fa5a3c783451d12b10ebdb4c0aafe9
parent: d1b786fe629ae9a80f37f64fdf48b9d7c132cd11 (diff)
parent: 42be8fa560a7554ac35801b46c3a0a007fd742ce (diff)
43 files changed, 863 insertions, 596 deletions
diff --git a/doc/contributing.texi b/doc/contributing.texi
index f3cc4d7af7..9e9b89782c 100644
--- a/doc/contributing.texi
+++ b/doc/contributing.texi
@@ -524,7 +524,7 @@ We also recommend that you run @code{:set autoindent} so that your code is
 automatically indented as you type.
 
 For the interaction with Git,
-@uref{https://www.vim.org/scripts/script.php?script_id=2975
+@uref{https://www.vim.org/scripts/script.php?script_id=2975,
 @code{fugitive.vim}} is the most commonly used plugin:
 
 @example
diff --git a/etc/teams.scm b/etc/teams.scm
index d86647e7ea..76633c2184 100755
--- a/etc/teams.scm
+++ b/etc/teams.scm
@@ -300,6 +300,7 @@ asdf-build-system."
   (team 'go
         #:name "Go team"
         #:scope (list "gnu/packages/golang.scm"
+                      "gnu/packages/golang-check.scm"
                       "guix/build/go-build-system.scm"
                       "guix/build-system/go.scm"
                       "guix/import/go.scm"
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index afbcf7fda6..17225863d7 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -4432,6 +4432,9 @@ late.")
                      " *lmonpl = '\\0'"))
                   #t))))
     (build-system gnu-build-system)
+    (arguments
+     ;; GCC 11 defaults to c++17 but this package needs something older.
+     (list #:configure-flags #~'("CXXFLAGS=-std=c++14 -O2 -g")))
     (inputs
      (list openmpi
            munge
@@ -4439,7 +4442,7 @@ late.")
            libelf
            libgcrypt
            libgpg-error))
-    (synopsis "Infrastructue for large scale tool daemon launching")
+    (synopsis "Infrastructure for large-scale tool daemon launching")
     (description
      "LaunchMON is a software infrastructure that enables HPC run-time
 tools to co-locate tool daemons with a parallel job.  Its API allows a
@@ -4452,7 +4455,7 @@ launch daemons into the relevant nodes.")
 (define-public spindle
   (package
     (name "spindle")
-    (version "0.10")
+    (version "0.13")
     (source (origin
               ;; We use git checkout to avoid github auto-generated tarballs
               (method git-fetch)
@@ -4462,16 +4465,15 @@ launch daemons into the relevant nodes.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "15n3ay0qq81r5v7fif61q1vdjcq44pp2nynkh3fvbzc9fj3c39wd"))))
+                "1z594nhash1him9v00qmyqv9jvikzrs4wxqy1cvnfwqwnrrkp707"))))
     (build-system gnu-build-system)
     (arguments '(#:configure-flags '("--enable-sec-launchmon"
                                      "--enable-sec-munge"
-                                     "--enable-sec-none")))
+                                     "--enable-sec-none"
+                                     ;; Fails to build as c++17.
+                                     "CXXFLAGS=-std=c++14 -O2 -g")))
     (inputs
-     `(("mpi" ,openmpi)
-       ("munge" ,munge)
-       ("launchmon" ,launchmon)
-       ("libgcrypt" ,libgcrypt)))
+     (list openmpi munge launchmon libgcrypt))
     (synopsis "Scalable library loading in HPC environments")
     (description
      "Spindle is a tool for improving the performance of dynamic library and
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 47913a1282..c063285b52 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -589,13 +589,13 @@ mining in astronomy.")
 (define-public python-fitsio
   (package
     (name "python-fitsio")
-    (version "1.2.0")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "fitsio" version))
        (sha256
-        (base32 "04fbg1ffj7qrlzw50xzzkfnlk6qjjqq96j0im7phprmwb1rbvzzh"))
+        (base32 "19him5rcpjyz14ghkmifnd1xl3ivlyy84h45k6j2pyr5ixc60ky6"))
        (modules '((guix build utils)))
        (snippet
         ;; Remove the bundled cfitsio. When update the package check the
@@ -1121,7 +1121,7 @@ image formats.")
 (define-public splash
   (package
     (name "splash")
-    (version "3.8.4")
+    (version "3.9.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1129,7 +1129,7 @@ image formats.")
                     (commit (string-append "v" version))))
               (sha256
                (base32
-                "1l18sqz5mpab9wb5hlbfy18wfwq6fpijc3p9wa5bv6lrcymvpirp"))
+                "19r5j4jrxhp3gf865ns59vvfnn5a303dqgmb8y2kgcsx26fci1hs"))
               (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
@@ -1385,7 +1385,7 @@ any arbitrary astrometric projection defined in the WCS standard.")
 (define-public celestia
   (package
     (name "celestia")
-    (version "1.6.3")
+    (version "1.6.4")
     (source
      (origin
        (method git-fetch)
@@ -1394,7 +1394,7 @@ any arbitrary astrometric projection defined in the WCS standard.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0dzci5n7gcnm1vq916gsn9zddkhbzhbsakqxrpnmvzibsqznn6c8"))))
+        (base32 "0nz9k5nd2zmrbwj1qhsfwmvqymqk8c4yjxpybck44isrild2ah9j"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -1614,19 +1614,27 @@ astronomy and astrophysics.")
        (uri (pypi-uri "astroquery" version))
        (sha256
         (base32 "1vhkzsqlgn3ji5by2rdf2gwklhbyzvpzb1iglalhqjkkrdaaaz1h"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
-     (list #:phases
-           #~(modify-phases %standard-phases
-               (add-before 'check 'writable-home
-                 (lambda _              ; some tests need a writable home
-                   (setenv "HOME" (getcwd))))
-               (replace 'check
-                 (lambda* (#:key tests? #:allow-other-keys)
-                   (when tests?
-                     (invoke "python" "-m" "pytest" "--pyargs" "astroquery"
-                             ;; Skip tests that require online data.
-                             "-m" "not remote_data")))))))
+     (list
+      #:test-flags
+      #~(list "--pyargs" "astroquery"
+              "-m" "not remote_data")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              (setenv "HOME" (getcwd)) ; some tests need a writable home
+              ;; To solve pytest/conftest issue. Pytest tries to load all
+              ;; files with word 'test' in them.
+              ;;
+              ;; ImportError while loading conftest ...
+              ;; _pytest.pathlib.ImportPathMismatchError: ...
+              ;;
+              (call-with-output-file "pytest.ini"
+                (lambda (port)
+                  (format port "[pytest]
+python_files = test_*.py"))))))))
     (propagated-inputs
      (list python-astropy
            python-beautifulsoup4
@@ -1636,12 +1644,13 @@ astronomy and astrophysics.")
            python-pyvo
            python-requests))
     (native-inputs
-     (list python-flask
-           python-jinja2
+     (list python-astropy-healpix
            python-matplotlib
+           ;; python-mocpy : Not packed yet, optional
            python-pytest-astropy
-           python-pytest-dependency))
-    (home-page "https://www.astropy.org/astroquery/")
+           python-pytest-dependency
+           python-regions))
+    (home-page "https://astroquery.readthedocs.io/en/latest/index.html")
     (synopsis "Access online astronomical data resources")
     (description "Astroquery is a package that contains a collection of tools
 to access online Astronomical data.  Each web service has its own sub-package.")
@@ -1726,13 +1735,13 @@ Herschel.")
 (define-public python-casa-formats-io
   (package
     (name "python-casa-formats-io")
-    (version "0.2.1")
+    (version "0.2.2")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "casa-formats-io" version))
               (sha256
                (base32
-                "07cchih2ws6jf6q1a4xhkv0jk96s3w08kzxx9l1911wzqk0pw9pj"))))
+                "16qwr6yq86qgdb0lvnmfm5mn6g2d29b1vrmfv26v77kxm6szxr8h"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1835,13 +1844,13 @@ attempting to maintain ISTP compliance
 (define-public python-crds
   (package
     (name "python-crds")
-    (version "11.17.7")
+    (version "11.17.9")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "crds" version))
               (sha256
                (base32
-                "10cxhb1xss21p992bfd5jm8bix1n12h0fd8m5sp6bcsgn6zs94v0"))))
+                "0ha7ibs5lmqs9pcr546jyxzgrmx1xyqps7fsp220rvlsbsisdgm0"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1924,18 +1933,7 @@ Cesium.")
        (uri (pypi-uri "drms" version))
        (sha256
         (base32 "0mkrmr55fgca441z7hvsyri6x9cjsh0sfas3hrj0k1k10k8vszbw"))))
-    (build-system python-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key inputs outputs tests?
-                      #:allow-other-keys)
-              (when tests?
-                (add-installed-pythonpath inputs outputs)
-                (setenv "JSOC_EMAIL" "jsoc@sunpy.org")
-                (invoke "python" "-m" "pytest" "-vv")))))))
+    (build-system pyproject-build-system)
     (native-inputs
      (list python-astropy
            python-pytest-astropy
@@ -2120,27 +2118,22 @@ of astronomical sources.")
     (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags
+      #~(list "-m" "not remote_data"
+              ;; TODO: Review failing tests later when any upstream
+              ;; suggestions are provided:
+              ;; https://github.com/poliastro/poliastro/issues/1618
+              "-k" (string-append "not test_czml_add_trajectory"
+                                  " and not test_czml_custom_packet"
+                                  " and not test_czml_ground_station"
+                                  " and not test_czml_groundtrack"
+                                  " and not test_czml_preamble"))
       #:phases
       #~(modify-phases %standard-phases
           ;; NOTE: Tests take about 7-10 minutes to pass.
           (add-before 'check 'prepare-test-environment
             (lambda _
-              (setenv "HOME" "/tmp")
-              ;; TODO: Review failing tests later when any upstream
-              ;; suggestions are provided:
-              ;; https://github.com/poliastro/poliastro/issues/1618
-              (substitute* "tests/test_czml.py"
-              (("def test_czml_add_trajectory") "def __off_test_czml_add_trajectory")
-              (("def test_czml_custom_packet") "def __off_test_czml_custom_packet")
-              (("def test_czml_ground_station") "def __off_test_czml_ground_station")
-              (("def test_czml_groundtrack") "def __off_test_czml_groundtrack")
-              (("def test_czml_preamble") "def __off_test_czml_preamble"))))
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "python" "-m" "pytest"
-                        ;; Skip tests that need remote data.
-                        "-m" "not remote_data")))))))
+              (setenv "HOME" "/tmp"))))))
     (native-inputs
      (list python-coverage
            python-hypothesis
@@ -2373,13 +2366,13 @@ changing the pixel resolution, orientation, coordinate system.")
 (define-public python-sgp4
   (package
     (name "python-sgp4")
-    (version "2.22")
+    (version "2.23")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "sgp4" version))
        (sha256
-        (base32 "1yc6gcbhz80i875j0wf6ikx7rzs0m7m1qp72dmdhdjidmpma5w0p"))))
+        (base32 "0aalbmldks6ykgkcxwkvnp04q0avhv903m5zwvg8i7zvl99xrbfq"))))
     (build-system python-build-system)
     (propagated-inputs
      (list python-numpy))
@@ -2674,7 +2667,7 @@ Science Institute} image array manipulation functions.")
               (sha256
                (base32
                 "14457izlbnks84dyza75ib3nvx2w8nhlqm9vc1zb7hbhknb5gjvw"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ;No tests
     (propagated-inputs (list python-numpy))
@@ -2702,11 +2695,23 @@ task}.")
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; XXX: Fix failing tests. There are errors to load test files.
-      #:tests? #f))
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; Test steps are taken from GitHub Actions.
+          ;; See https://github.com/spacetelescope/stsci.stimage/issues/27
+          (replace 'check
+            (lambda _
+              (copy-file (string-append
+                #$(this-package-native-input "python-waf") "/bin/waf")
+               "waf")
+              (invoke "python" "waf" "configure" "build" "do_tests"))))))
     (propagated-inputs (list python-numpy))
-    (native-inputs (list python-codecov python-pytest python-pytest-cov
-                         python-setuptools-scm))
+    (native-inputs
+     (list python-codecov
+           python-pytest
+           python-pytest-cov
+           python-setuptools-scm
+           python-waf))
     (home-page "https://stscistimage.readthedocs.io/en/latest/")
     (synopsis "STScI image processing")
     (description "This package provides an astronomical Python package with
@@ -2974,44 +2979,40 @@ low quality ones")
     (license license:gpl3+)))
 
 (define-public libpasastro
-  ;; NOTE: (Sharlatan-20210122T215921+0000): the version tag has a build
-  ;; error on spice which is resolved with the latest commit.
-  (let ((commit "e3c218d1502a18cae858c83a9a8812ab197fcb60")
-        (revision "1"))
-    (package
-      (name "libpasastro")
-      (version (git-version "1.4.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/pchev/libpasastro")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "0asp2sn34nds5va2ghppwc41vb6j3d1mf049j949rgrll817kx47"))))
-      (build-system gnu-build-system)
-      (arguments
-       `(#:tests? #f
-         #:make-flags
-         (list
-          ,(match (or (%current-target-system) (%current-system))
-             ((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux")
-              "OS_TARGET=linux")
-             (_ #f))
-          ,(match (or (%current-target-system) (%current-system))
-             ("i686-linux" "CPU_TARGET=i386")
-             ("x86_64-linux" "CPU_TARGET=x86_64")
-             ((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l")
-             (_ #f))
-          (string-append "PREFIX=" (assoc-ref %outputs "out")))
-         #:phases
-         (modify-phases %standard-phases
-           (delete 'configure))))
-      (home-page "https://github.com/pchev/libpasastro")
-      (synopsis "Interface to astronomy library for use from Pascal program")
-      (description
-       "This package provides shared libraries to interface Pascal program with
+  (package
+    (name "libpasastro")
+    (version "1.4.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/pchev/libpasastro")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1h92p9ph3zi4w8krny1azd9wgwna2nf07ims983jcky1chkfm0is"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:tests? #f
+       #:make-flags
+       (list
+        ,(match (or (%current-target-system) (%current-system))
+           ((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux")
+            "OS_TARGET=linux")
+           (_ #f))
+        ,(match (or (%current-target-system) (%current-system))
+           ("i686-linux" "CPU_TARGET=i386")
+           ("x86_64-linux" "CPU_TARGET=x86_64")
+           ((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l")
+           (_ #f))
+        (string-append "PREFIX=" (assoc-ref %outputs "out")))
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure))))
+    (home-page "https://github.com/pchev/libpasastro")
+    (synopsis "Interface to astronomy library for use from Pascal program")
+    (description
+     "This package provides shared libraries to interface Pascal program with
 standard astronomy libraries:
 
 @itemize
@@ -3020,7 +3021,7 @@ standard astronomy libraries:
 @item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS.
 @item @code{libpasspice.so}: To work with NAIF/SPICE kernel.
 @end itemize\n")
-      (license license:gpl2+))))
+      (license license:gpl2+)))
 
 (define-public libxisf
   (package
@@ -3153,23 +3154,21 @@ Mercator, Mollweide, Peters, polyconic, orthographic and rectangular.")
        (sha256
         (base32 "0hwf97kng1zy8rxyglw04x89p0bg07zq30hgghm20yxiw2xc8ng7"))))
     (build-system gnu-build-system)
+    (arguments
+     (list
+      #:configure-flags #~(list "CFLAGS=-O2 -g -fcommon")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-tests
+            (lambda _
+              ;; Remove reference to non-existent file.
+              (substitute* "po/POTFILES.in"
+                (("src/gtk-sat-tree\\.c") "")))))))
     (native-inputs
-     `(("intltool" ,intltool)
-       ("gettext" ,gettext-minimal)
-       ("pkg-config" ,pkg-config)))
+     (list gettext-minimal intltool pkg-config))
     (inputs
      (list curl glib goocanvas gtk+))
-    (arguments
-     `(#:configure-flags '("CFLAGS=-O2 -g -fcommon")
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'fix-tests
-           (lambda _
-             ;; Remove reference to non-existent file.
-             (substitute* "po/POTFILES.in"
-               (("src/gtk-sat-tree\\.c")
-                ""))
-             #t)))))
+    (home-page "http://gpredict.oz9aec.net/index.php")
     (synopsis "Satellite tracking and orbit prediction application")
     (description
      "Gpredict is a real-time satellite tracking and orbit prediction
@@ -3177,7 +3176,6 @@ application.  It can track a large number of satellites and display their
 position and other data in lists, tables, maps, and polar plots (radar view).
 Gpredict can also predict the time of future passes for a satellite, and
 provide you with detailed information about each pass.")
-    (home-page "http://gpredict.oz9aec.net/index.php")
     (license license:gpl2+)))
 
 (define-public sgp4
@@ -3393,13 +3391,13 @@ Moon position, etc.")
 (define-public python-jplephem
   (package
     (name "python-jplephem")
-    (version "2.19")
+    (version "2.20")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "jplephem" version))
        (sha256
-        (base32 "1kvdzwyh0invinvcnwfr14r9zbqzcwkdh0cpzw1m4vkdcm64aqn1"))))
+        (base32 "1yp1l3n07849411099f976ps0pyv8jk8k5l9da9nhv54ir86v65v"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3537,7 +3535,7 @@ functions, so that they can be called with scalar or array inputs.")
 (define-public python-pynbody
   (package
     (name "python-pynbody")
-    (version "1.4.1")
+    (version "1.4.2")
     (source
      (origin
        (method git-fetch) ;PyPi doesn't have not prebuit version.
@@ -3546,7 +3544,7 @@ functions, so that they can be called with scalar or array inputs.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1vl1yif3bsazcil6saghrpa4qsg47fnr7xnkjpqnp44b7ipww27r"))
+        (base32 "1lwjs8vf3pc4a64c93fa5k6r276g1c60722swns2r10ig1s4wk0a"))
        (modules '((guix build utils)))
        (snippet
         ;; Symlink goes to not existing directory.
@@ -3582,7 +3580,12 @@ functions, so that they can be called with scalar or array inputs.")
                            "--ignore=tests/sph_smooth_test.py"
                            "--ignore=tests/subfind_test.py"
                            "--ignore=tests/subfindhdf_gadget4_test.py"
-                           "--ignore=tests/tipsy_test.py")))
+                           "--ignore=tests/tipsy_test.py")
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-before 'build 'set-compiler
+                 (lambda _
+                   (setenv "CC" #$(cc-for-target)))))))
     (native-inputs
      (list python-cython
            python-pandas
@@ -3721,9 +3724,21 @@ datetime object.")
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; XXX: Test needs more love to pass.
-      ;; ERROR collecting synphot/tests/test_utils.py
-      #:tests? #f))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              (invoke "python" "setup.py" "build_ext" "--inplace")
+              ;; To solve pytest/conftest issue. Pytest tries to load all
+              ;; files with word 'test' in them.
+              ;;
+              ;; ImportError while loading conftest ...
+              ;; _pytest.pathlib.ImportPathMismatchError: ...
+              ;;
+              (call-with-output-file "pytest.ini"
+                (lambda (port)
+                  (format port "[pytest]
+python_files = test_*.py"))))))))
     (propagated-inputs (list python-astropy python-numpy python-scipy))
     (native-inputs (list python-pytest python-pytest-astropy
                          python-setuptools-scm))
@@ -3772,13 +3787,13 @@ between image and reference catalogs. Currently only aligning images with
 (define-public python-asdf-3.0
   (package
     (name "python-asdf")
-    (version "3.0.0")
+    (version "3.0.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "asdf" version))
        (sha256
-        (base32 "1a6lf75q9w8fsyq3hn6a7fyldkkyqxddlq21fwdfjwij40dzh3s8"))))
+        (base32 "1jsk7b4mx04l0a08j832vnl309dba3gjnha9mbd61dzs9ridrfna"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-fsspec
@@ -4117,13 +4132,13 @@ default) to world coordinates.")
 (define-public python-rad
   (package
     (name "python-rad")
-    (version "0.17.1")
+    (version "0.18.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "rad" version))
               (sha256
                (base32
-                "11jhh3qmd00g8sn6hcfshbpb2qy1rfj0xkxn30pd63lqazg4ra3p"))))
+                "1wgnbhldgq0j55yzg33y11vd5k5nzwckiccxywvmq518qh19pky5"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -4179,13 +4194,13 @@ channels
 (define-public python-roman-datamodels
   (package
     (name "python-roman-datamodels")
-    (version "0.17.1")
+    (version "0.18.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "roman_datamodels" version))
               (sha256
                (base32
-                "1y12cp8172i4a314gmhpi86jw6pfylz1adh0rzr5zqmvd3mrjqlj"))))
+                "0crlmd99p2nyqmrbykdqqng7v8zb4sibm8j9aqrq3ppak3r3r7q1"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -4223,7 +4238,7 @@ pipelines.")
 (define-public python-astroalign
   (package
     (name "python-astroalign")
-    (version "2.5.0")
+    (version "2.5.1")
     (source
      (origin
        ;; There are no tests in the PyPI tarball.
@@ -4233,7 +4248,7 @@ pipelines.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0br1v2l48jx214a1bcdr8wz1wggcswcbz4cqv8d19fd46fc4qlhy"))))
+        (base32 "1kr5cszcxvrdbksy7mvv3ps1h1jzrn4yamfr6x7whkbi6bpqf7xp"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-astropy
@@ -4281,13 +4296,13 @@ orbit around the Earth.")
 (define-public python-wiimatch
   (package
     (name "python-wiimatch")
-    (version "0.3.1")
+    (version "0.3.2")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "wiimatch" version))
               (sha256
                (base32
-                "0x6p5z6a2cqinckwlpinjxagvmswl149s1jn6ihmdxk4k0h8rrz0"))))
+                "15kq7z30m9i286ncs9xvpaq3dq1p5fa47jz21prq146qwr7j6dm8"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-scipy))
     (native-inputs (list python-codecov python-pytest python-pytest-cov
diff --git a/gnu/packages/benchmark.scm b/gnu/packages/benchmark.scm
index 4d92457e59..08fece6e91 100644
--- a/gnu/packages/benchmark.scm
+++ b/gnu/packages/benchmark.scm
@@ -137,7 +137,7 @@ is to write a job file matching the I/O load one wants to simulate.")
 (define-public intel-mpi-benchmarks/openmpi
   (package
     (name "intel-mpi-benchmarks")
-    (version "2019.6")
+    (version "2021.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -146,7 +146,7 @@ is to write a job file matching the I/O load one wants to simulate.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "02hxbk9g9nl59bk5qcfl3djj7b58vsqys340m1xdbyqwcrbnahh9"))
+                "04kczch2hlfzbgk929vcxx480kc6raba8rbz246j7d26k1z1zh8h"))
               (modules '((guix build utils)))
               (snippet
                '(begin
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ee5a94c461..7ff364ee55 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12203,13 +12203,13 @@ rectangular layout tree built by ggtree with the grammar of ggplot2.")
 (define-public r-ggpicrust2
   (package
     (name "r-ggpicrust2")
-    (version "1.7.2")
+    (version "1.7.3")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "ggpicrust2" version))
               (sha256
                (base32
-                "0yk62cc0vmv6dyfiwvvbgpsqlvp1cw61db60153xvzmcdvd077cl"))))
+                "0zjlsvzl2f74fvqw4ijnai23qwhlcpgd5p8z9dclnwnsgdbm6hcq"))))
     (properties `((upstream-name . "ggpicrust2")))
     (build-system r-build-system)
     (propagated-inputs (list r-aldex2
@@ -19027,14 +19027,14 @@ using whole genome sequencing data.")
 (define-public r-activepathways
   (package
     (name "r-activepathways")
-    (version "2.0.2")
+    (version "2.0.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ActivePathways" version))
        (sha256
         (base32
-         "1h0ih87pf6b5mdhmh65frv3nqx7v5adqv37wn2p3gkpszd6hwc79"))))
+         "0mgvxpqaq0jncr1kzmwhqkv3pajx2fz6vwhv5arw7fgla6w09p9h"))))
     (properties
      `((upstream-name . "ActivePathways")))
     (build-system r-build-system)
@@ -22029,14 +22029,14 @@ on the plot.")
 (define-public r-abn
   (package
     (name "r-abn")
-    (version "3.0.2")
+    (version "3.0.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "abn" version))
        (sha256
         (base32
-         "06n69cbkdqpwpxks8276h43132c9v57n4hg33vsjjyxjifwbwxwh"))))
+         "1yh9nhfphalxh77132r0fkpp71mqsfhb8jk11is4d5nvlvr5316z"))))
     (build-system r-build-system)
     (inputs
      (list gsl))
diff --git a/gnu/packages/c.scm b/gnu/packages/c.scm
index ea58c68262..da0d11e8f7 100644
--- a/gnu/packages/c.scm
+++ b/gnu/packages/c.scm
@@ -3,7 +3,7 @@
 ;;; Copyright © 2016, 2017, 2018, 2019, 2021 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2018, 2020–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018, 2019 Pierre Neidhardt <mail@ambrevar.xyz>
-;;; Copyright © 2019, 2020, 2022 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2019, 2020, 2022, 2023 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2019, 2021 Guillaume Le Vaillant <glv@posteo.net>
 ;;; Copyright © 2019 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
@@ -1198,7 +1198,7 @@ Telemetry Transport (MQTT) publish-subscribe messaging protocol.")
 (define-public mimalloc
   (package
     (name "mimalloc")
-    (version "2.0.9")
+    (version "2.1.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1207,10 +1207,13 @@ Telemetry Transport (MQTT) publish-subscribe messaging protocol.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "19w0i28p6knjd192rrcw1ayc3x0qp6rcm48cwkls4kwn8fng81fj"))))
+                "1pyf05snc1ib7zjjm9kspvbmynd8lmxqw72qcpz8lcyzyywmz24i"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:build-type "Release"))
+     `(#:build-type "Release"
+       ,@(if (target-ppc32?)
+           `(#:configure-flags '("-DMI_USE_LIBATOMIC=ON"))
+           '())))
     (synopsis "General purpose memory allocator")
     (description "@code{mimalloc} is a drop-in replacement for @code{malloc}.")
     (home-page "https://microsoft.github.io/mimalloc/")
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index cf26196a24..1f5b886977 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -2551,7 +2551,7 @@ mypy plugins.")
 (define-public python-pytest-perf
   (package
     (name "python-pytest-perf")
-    (version "0.12.0")
+    (version "0.13.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2560,26 +2560,21 @@ mypy plugins.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "05mgknvrmyz1kmkgw8jzvisavc68wz1g2wxv69i6xvzgqxf17m9f"))))
-    (build-system python-build-system)
+                "1hrccvrbccqwba04pqj749hdzn4sgldmbpg74nf3fzz7wyg6jxqk"))))
+    (build-system pyproject-build-system)
     (arguments
      (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "pytest" "-k"
-                        (string-append
-                         ;; Do not test the myproject.toml build as it tries to pull
-                         ;; dependencies from the internet.
-                         "not project "
-                         ;; The benchmark test attempts to install the
-                         ;; package, failing to pull its dependencies from the
-                         ;; network.
-                         "and not BenchmarkRunner "
-                         ;; The upstream_url test requires networking.
-                         "and not upstream_url"))))))))
+      #:test-flags '(list "-k"
+                          (string-append
+                           ;; Do not test the myproject.toml build as it tries to pull
+                           ;; dependencies from the internet.
+                           "not project "
+                           ;; The benchmark test attempts to install the
+                           ;; package, failing to pull its dependencies from the
+                           ;; network.
+                           "and not BenchmarkRunner "
+                           ;; The upstream_url test requires networking.
+                           "and not upstream_url"))))
     (native-inputs
      (list python-pytest
            python-pytest-black
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 11bc4aee50..221a81612c 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -147,13 +147,13 @@ the vignette \"AER\" for a package overview.)")
 (define-public r-afpt
   (package
     (name "r-afpt")
-    (version "1.1.0.3")
+    (version "1.1.0.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "afpt" version))
               (sha256
                (base32
-                "18izncbr3ljckil97xx2w1y0y7qjykp06wm0ap8ismahqvia3xz3"))))
+                "15pa4p78p6r478l05481lzx6z4ahswj728s1sb3xp3pvn6rv4jfj"))))
     (properties `((upstream-name . "afpt")))
     (build-system r-build-system)
     (native-inputs (list r-knitr))
@@ -391,13 +391,13 @@ labels on the node can also be achieved.")
 (define-public r-collapse
   (package
     (name "r-collapse")
-    (version "2.0.3")
+    (version "2.0.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "collapse" version))
        (sha256
-        (base32 "16y4qxqr4k04690xn8s6c9fr3igpk34pgxygxkc41gc1na0ym37v"))))
+        (base32 "0azyl6667dzwns9knp3fplv6f9nav36wsrv42qzv90p5kzcaa872"))))
     (properties `((upstream-name . "collapse")))
     (build-system r-build-system)
     (propagated-inputs (list r-rcpp))
@@ -1490,14 +1490,14 @@ RUV-I, and RUV-III, along with various supporting algorithms.")
 (define-public r-waldo
   (package
     (name "r-waldo")
-    (version "0.5.1")
+    (version "0.5.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "waldo" version))
        (sha256
         (base32
-         "0inzdwna22axhjw0jdrk800g7zbkpcs7g1cmdi83r7j4zxn0ggs5"))))
+         "019fvypq36kwvr2znlr0fd9f2ihb08rgigf6ypdybry5n8daxkc2"))))
     (properties `((upstream-name . "waldo")))
     (build-system r-build-system)
     (propagated-inputs
@@ -2201,14 +2201,14 @@ variables.")
 (define-public r-ggpp
   (package
     (name "r-ggpp")
-    (version "0.5.4")
+    (version "0.5.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggpp" version))
        (sha256
         (base32
-         "05w74003jp7kprxxbni0plr7ydzyc5hzw8g39kn0qd4p7dksjpwr"))))
+         "0nysan87vgy0pbcks3bychm84zcwx9pf4p250b45ghimhvxh5cvm"))))
     (properties `((upstream-name . "ggpp")))
     (build-system r-build-system)
     (propagated-inputs
@@ -4080,24 +4080,26 @@ particularly easy to create complete web applications using httpuv alone.")
 (define-public r-httr2
   (package
     (name "r-httr2")
-    (version "0.2.3")
+    (version "1.0.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "httr2" version))
               (sha256
                (base32
-                "0gabjyv2699p7fb4225jsr2kkbarx1w01kha8ipqzwhjjl13481m"))))
+                "0jaajfr1hr6bzb1vz2nw2csl2l09kbq619vsq5yrlchcarpjv1fb"))))
     (properties `((upstream-name . "httr2")))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cli
            r-curl
            r-glue
+           r-lifecycle
            r-magrittr
            r-openssl
            r-r6
            r-rappdirs
            r-rlang
+           r-vctrs
            r-withr))
     (native-inputs (list r-knitr))
     (home-page "https://httr2.r-lib.org")
@@ -4227,13 +4229,13 @@ a list of p-values.")
 (define-public r-htmltools
   (package
     (name "r-htmltools")
-    (version "0.5.6.1")
+    (version "0.5.7")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "htmltools" version))
               (sha256
                (base32
-                "0km08kvg0j2h1d0v6wpxf09yjadhp2srjjnmqwcahfyh37w4xf09"))))
+                "11mkk26pjck6r2w2nv6niy90c6l13g64zi01s3j4jgq634kdic7c"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-base64enc r-digest r-ellipsis r-fastmap r-rlang))
@@ -5223,14 +5225,14 @@ in R and Shiny via the D3 visualization library.")
 (define-public r-wesanderson
   (package
     (name "r-wesanderson")
-    (version "0.3.6")
+    (version "0.3.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "wesanderson" version))
        (sha256
         (base32
-         "09mr6p2jmqdjq27cz974w5hyxgn929zp9z3inhxqmmh1582fmdi2"))))
+         "0kjyz5mrkrirg2glf57b0rhxj2fdp1m6q8zx947y0jg1w425cbn9"))))
     (properties `((upstream-name . "wesanderson")))
     (build-system r-build-system)
     (home-page "https://github.com/karthik/wesanderson")
@@ -5562,14 +5564,14 @@ and/or higher-resolution databases.")
 (define-public r-maps
   (package
     (name "r-maps")
-    (version "3.4.1")
+    (version "3.4.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "maps" version))
        (sha256
         (base32
-         "0034114pdakxcx480b45qy9j4vq1v5ss961ssy92w4nqiqhsb4z6"))))
+         "06l58919kgks9adwzgfir44q6gnx46j3c7ah9c6d4dn36xsld7fk"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/maps")
     (synopsis "Draw geographical maps")
@@ -5601,18 +5603,18 @@ coordinates.")
 (define-public r-rgooglemaps
   (package
     (name "r-rgooglemaps")
-    (version "1.4.5.3")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "RgoogleMaps" version))
        (sha256
         (base32
-         "02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi"))))
+         "197q5i2sky824dwq0x4hhrpkrsd1b6f9qg06mjlwb89mv4vnrzhl"))))
     (properties `((upstream-name . "RgoogleMaps")))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-png r-sp))
+     (list r-png))
     (home-page "https://cran.r-project.org/web/packages/RgoogleMaps")
     (synopsis "Use Google Maps in R")
     (description "This package serves two purposes:
@@ -7188,13 +7190,13 @@ provides an interactive R manager and worker environment.")
 (define-public r-rmumps
   (package
     (name "r-rmumps")
-    (version "5.2.1-23")
+    (version "5.2.1-25")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rmumps" version))
        (sha256
-        (base32 "1mypmf9j9fzaldpv56bqng5yhyxfc55hvzd98d1dk6w1m1sncn09"))))
+        (base32 "15yn5i6v3xz90gimvaqgvp805cfpvr439y9wpckyvwn1iwp2745y"))))
     (properties `((upstream-name . "rmumps")))
     (build-system r-build-system)
     (inputs (list zlib))
@@ -7942,14 +7944,14 @@ these progress updates.")
 (define-public r-lava
   (package
     (name "r-lava")
-    (version "1.7.2.1")
+    (version "1.7.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lava" version))
        (sha256
         (base32
-         "0bpg75w0ri1mkf7cw9gbw1fjpy4mh9h48k019y772xjfgrf1yayl"))))
+         "023av1mz4hr1lqv8cpbx0j1y3c7ljyns35rm838c618b6pqps22f"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-future-apply r-numderiv r-progressr r-squarem r-survival))
@@ -9926,13 +9928,13 @@ iVAT).")
 (define-public r-xfun
   (package
     (name "r-xfun")
-    (version "0.40")
+    (version "0.41")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xfun" version))
        (sha256
-        (base32 "1xvngh0kbd87cl39bzmjx5i57pmxik9gw50li8dh42j438cnma8y"))))
+        (base32 "00ivgr557ja8l33lvawrivfhgj1xbjmdi4dj07zybwa1y6wc6x13"))))
     (build-system r-build-system)
     (properties
      ;; knitr itself depends on xfun
@@ -10494,13 +10496,13 @@ information between package updates.")
 (define-public r-leaflet
   (package
     (name "r-leaflet")
-    (version "2.2.0")
+    (version "2.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "leaflet" version))
        (sha256
-        (base32 "0k0zplbhmvld6q1id17s827z1230kvnz16c4hlvp6jn9g26yy0dq"))
+        (base32 "1gfsf7bsmp418zv4gpk5i1xg5vvgqwpdkznnvj5x0mk4rcqk1i81"))
        (snippet
         '(for-each
           delete-file
@@ -10891,13 +10893,13 @@ multivariate distributions.")
 (define-public r-fbasics
   (package
     (name "r-fbasics")
-    (version "4031.95")
+    (version "4032.96")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "fBasics" version))
               (sha256
                (base32
-                "1d1pbyidng68fcc6vrm98ybklz6yzrinqc2dhg8q6f1pg3kkx6bj"))))
+                "14461d6ac8hcn1x3srh45a4s5imafqb0xy8bn5l6d0qwhw4njmg1"))))
     (properties `((upstream-name . "fBasics")))
     (build-system r-build-system)
     (propagated-inputs
@@ -12628,20 +12630,20 @@ JavaScript library) and interact with the igraph package.")
 (define-public r-data-tree
   (package
     (name "r-data-tree")
-    (version "1.0.0")
+    (version "1.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "data.tree" version))
        (sha256
         (base32
-         "0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"))))
+         "0qxd1g159phc6f18iddjljdg96sh09w63xqawjwbwyhg4blm9ddh"))))
     (properties `((upstream-name . "data.tree")))
     (build-system r-build-system)
     (propagated-inputs
      (list r-r6 r-stringi))
     (native-inputs
-     (list r-knitr))
+     (list r-knitr r-rmarkdown))
     (home-page "https://github.com/gluc/data.tree")
     (synopsis "General purpose hierarchical data structure")
     (description
@@ -12688,14 +12690,14 @@ automatically translated to the equivalent, but usually much faster,
 (define-public r-collapsibletree
   (package
     (name "r-collapsibletree")
-    (version "0.1.7")
+    (version "0.1.8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "collapsibleTree" version))
        (sha256
         (base32
-         "0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"))
+         "1i5nmw5w7m8xdgxzim8z8n4w321f42isxbvvajl8ii59pg7drilq"))
        (snippet
         '(begin
            ;; Delete minified JavaScript file
@@ -12781,14 +12783,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
 (define-public r-rastervis
   (package
     (name "r-rastervis")
-    (version "0.51.5")
+    (version "0.51.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rasterVis" version))
        (sha256
         (base32
-         "18bsrw629p4pkyhrpjmiyhq73w882bhgpwmkih0gjnw3ywwgx7rs"))))
+         "12cl201gwah0bn14ji4nbygayd77w5fck9zkcikhrda5s0chvgb1"))))
     (properties `((upstream-name . "rasterVis")))
     (build-system r-build-system)
     (propagated-inputs
@@ -13618,14 +13620,14 @@ implemented in bibutils.")
 (define-public r-rdpack
   (package
     (name "r-rdpack")
-    (version "2.5")
+    (version "2.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Rdpack" version))
        (sha256
         (base32
-         "0xy8w3law1dn53f1gv4jd637pwssr928pvgchpbrpsqz8ghv4kad"))))
+         "02i21i85pb5aim529byjwhmyyz9jd82mi4j26a3kay0pcn6djxba"))))
     (properties `((upstream-name . "Rdpack")))
     (build-system r-build-system)
     (propagated-inputs
@@ -14360,14 +14362,14 @@ the work.")
 (define-public r-doby
   (package
     (name "r-doby")
-    (version "4.6.19")
+    (version "4.6.20")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "doBy" version))
        (sha256
         (base32
-         "14hvbhf9zamqkjhr9jd8zjpm9xlc8hwqj04gy6ln32n2hzqqqr6v"))))
+         "08nsl9xzyi2k7xkwa9mn91fn77ji0z9z5lm388pfdmydbfmpy2ks"))))
     (properties `((upstream-name . "doBy")))
     (build-system r-build-system)
     (propagated-inputs
@@ -14469,14 +14471,14 @@ containing one or more SNPs that evolved under directional selection.")
 (define-public r-proc
   (package
     (name "r-proc")
-    (version "1.18.4")
+    (version "1.18.5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "pROC" version))
        (sha256
         (base32
-         "0lqar1lbm461in4jb9rkdnpccl8lshrhig2qxr892m91mdxym46m"))))
+         "129cnh3kh9sr42nc7n9f14kr9svi3501834x40njynnzlr0wi4sm"))))
     (properties `((upstream-name . "pROC")))
     (build-system r-build-system)
     (propagated-inputs
@@ -15143,13 +15145,13 @@ subsequence} (LCS) using a dynamic programming algorithm.")
 (define-public r-mosaiccore
   (package
     (name "r-mosaiccore")
-    (version "0.9.2.1")
+    (version "0.9.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "mosaicCore" version))
        (sha256
-        (base32 "1yns15yxr6215xf9qsxfvl24a9zvh1chw49n31dql7fy1zr1dkmp"))))
+        (base32 "0v3xhv6yfk1hc6a40jjgp6vvq102qa1l4n787pfywx6jhzbhamp2"))))
     (properties `((upstream-name . "mosaicCore")))
     (build-system r-build-system)
     (propagated-inputs
@@ -15194,21 +15196,18 @@ haven package.")
 (define-public r-ggformula
   (package
     (name "r-ggformula")
-    (version "0.10.4")
+    (version "0.12.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggformula" version))
        (sha256
-        (base32 "07d9sq0dqi0g5x9h58icfk1f4hgg1xz4mhbp2z2rxg9qgs74fvdj"))))
+        (base32 "0vbpivyxms46px3wqkbl1wq199mqdxq94gsiplv4i7lz0lzghsfm"))))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-ggforce
-           r-ggplot2
+     (list r-ggplot2
            r-ggridges
-           r-ggstance
            r-labelled
-           r-magrittr
            r-mosaiccore
            r-rlang
            r-scales
@@ -15228,13 +15227,13 @@ while providing the intuitive capabilities of @code{r-ggplot2}.")
 (define-public r-mosaicdata
   (package
     (name "r-mosaicdata")
-    (version "0.20.3")
+    (version "0.20.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "mosaicData" version))
        (sha256
-        (base32 "1s97yq24z7yhzmx0dpspfadpd8hndyhn7aiw0nslwrhvilhwa409"))))
+        (base32 "0y6ii234paknak0p8cm5wcjia4s4wh7iixjbbvdgp0w17c05dckh"))))
     (properties `((upstream-name . "mosaicData")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/mosaicData/")
@@ -15269,13 +15268,13 @@ Processing of very large files is supported.")
 (define-public r-mosaic
   (package
     (name "r-mosaic")
-    (version "1.8.4.2")
+    (version "1.9.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "mosaic" version))
        (sha256
-        (base32 "12kpkb7vm54na9hjjkvzw6gm5plx0m6i0l9kihz2r30zanfx5jca"))))
+        (base32 "1dydqawljv5l9lmhdrhmr7wh3q1c2mnc61gc99jr0jbb1bmls327"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-dplyr
@@ -15288,6 +15287,7 @@ Processing of very large files is supported.")
            r-mosaicdata
            r-purrr
            r-rlang
+           r-tibble
            r-tidyr))
     (native-inputs
      (list r-knitr))
@@ -21979,14 +21979,14 @@ numbers from ZIP and ZINB distributions.")
 (define-public r-nor1mix
   (package
     (name "r-nor1mix")
-    (version "1.3-0")
+    (version "1.3-2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "nor1mix" version))
        (sha256
         (base32
-         "1817wcvlmxs70vs4db0jkxd7i037744zz8ay3c2a9949z29fxr4w"))))
+         "0252kqhdsp374isc59pm1c6dmsb16jibpnsp1bpyh4k5mg73cdj6"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/nor1mix/")
     (synopsis "Normal (1-d) mixture models")
@@ -22290,14 +22290,14 @@ can be used with function approximation, eligibility traces (Singh & Sutton,
 (define-public r-lemon
   (package
     (name "r-lemon")
-    (version "0.4.6")
+    (version "0.4.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lemon" version))
        (sha256
         (base32
-         "0v1kbyk64yzsk92h6yq03kp9alc9632qprznsws61r8firiskim5"))))
+         "1r33n7bkfhjpyi23j7gsi387qvyazcy9b912dsd3vg2yqir8s26p"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-ggplot2
@@ -25109,14 +25109,14 @@ Row} (CSR) format.")
 (define-public r-text2vec
   (package
     (name "r-text2vec")
-    (version "0.6.3")
+    (version "0.6.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "text2vec" version))
        (sha256
         (base32
-         "1hi7ydb7xkgbff4lwnnz1biyl8m90w16hn3x5rrzvscvm53sj4y7"))))
+         "0sjlvp4zhzwc0ai7626fpw3ws8xv0xhl8gv8mrk24lrpk5nhin2h"))))
     (properties `((upstream-name . "text2vec")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25218,14 +25218,14 @@ provides tools to compute this metric.")
 (define-public r-lintr
   (package
     (name "r-lintr")
-    (version "3.1.0")
+    (version "3.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lintr" version))
        (sha256
         (base32
-         "1kb3jrzh1vn1fpj6phm2ni542yjgbbjmzgkn8w7khmh1sd9mj7pp"))))
+         "07c7h30nh1529wba8xkyg2sapj6r7jjckrxyzhrg2ssfwzs4dwdw"))))
     (properties `((upstream-name . "lintr")))
     (build-system r-build-system)
     (propagated-inputs
@@ -26489,13 +26489,13 @@ function and interfaces to external frameworks.")
 (define-public r-covr
   (package
     (name "r-covr")
-    (version "3.6.3")
+    (version "3.6.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "covr" version))
        (sha256
-        (base32 "17m2zzgfghr7gzcdgim21vsl12nd4714867dcp9xfb6ili31ikn0"))
+        (base32 "0al6n4gnnvgxk968skqnajpqpqyl6kpam3fmn782kihhcl1h8qib"))
        (modules '((guix build utils)))
        ;; TODO: still need to replace highlight.js/highlight.pack.js
        (snippet
@@ -26616,14 +26616,14 @@ be used further by e.g. graphic devices.")
 (define-public r-graphlayouts
   (package
     (name "r-graphlayouts")
-    (version "1.0.1")
+    (version "1.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "graphlayouts" version))
        (sha256
         (base32
-         "0x777ixw2vvj1z3dams0zmyk25v7cdm4sx8v6knlb2mfkkg2gcyk"))))
+         "1mg0j9kcjp8dbpd8fy9vr5f35pz41v18vxc7q4pyl986pj859jam"))))
     (properties `((upstream-name . "graphlayouts")))
     (build-system r-build-system)
     (propagated-inputs
@@ -26767,14 +26767,14 @@ in pipelines.")
 (define-public r-parameters
   (package
     (name "r-parameters")
-    (version "0.21.2")
+    (version "0.21.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "parameters" version))
        (sha256
         (base32
-         "05ryyyibnm69hq1xa84r9n2gr1s1ifds70z4awmib2ch62098m43"))))
+         "091zpyq37v7xjicj4h4r4fqhrrc7d3hicgbdznsjn85sw4d7q595"))))
     (properties `((upstream-name . "parameters")))
     (build-system r-build-system)
     (propagated-inputs
@@ -26852,14 +26852,14 @@ atmospheric physics.")
 (define-public r-lifecycle
   (package
     (name "r-lifecycle")
-    (version "1.0.3")
+    (version "1.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lifecycle" version))
        (sha256
         (base32
-         "1hk9mblhap429fk77qpgc4hv0j91q5wpahi0y76w118m471zsnb4"))))
+         "1k4ibf2x90xgmzaq47vf9wrsh6a2fp2lg1l8bq89632bx33x795d"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cli r-glue r-rlang))
@@ -26990,12 +26990,12 @@ to ODEs by numerical differencing.")
 (define-public r-pracma
   (package
     (name "r-pracma")
-    (version "2.4.2")
+    (version "2.4.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "pracma" version))
               (sha256
-               (base32 "05lwx2yx7f45cr5amzbjv3b2p6ibspjxl0aglq2dga6rvxzk6l0x"))))
+               (base32 "0zxsqr7f4pcr1nmbbzliihyldv091ykzajv1mbdrkycp46pz6khs"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/pracma/")
     (synopsis "Practical numerical math functions")
@@ -28997,14 +28997,14 @@ be conducted.  A graphical user interface is also provided.")
 (define-public r-actcd
   (package
     (name "r-actcd")
-    (version "1.2-0")
+    (version "1.3-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ACTCD" version))
        (sha256
         (base32
-         "0mzjxxr2zfdidw8ibh6w8mvpkw3q3nvngqi05g9ind26ckvk053p"))))
+         "1a0gsznca5fv7i29xpcns4rkas5q88wv01rxvd4j66n64gw0ri4j"))))
     (properties `((upstream-name . "ACTCD")))
     (build-system r-build-system)
     (propagated-inputs
@@ -29403,14 +29403,14 @@ API; see the package vignette for details.")
 (define-public r-actuar
   (package
     (name "r-actuar")
-    (version "3.3-3")
+    (version "3.3-4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "actuar" version))
        (sha256
         (base32
-         "0ji5p19vqnr3i3vfrql2qndhzcjnr57jrh0szil6gaz6bm56afc4"))))
+         "06693w4cwcchi0z64vgg7khc4k4209nw6m2x441nwix4x6rk1zjs"))))
     (properties `((upstream-name . "actuar")))
     (build-system r-build-system)
     (propagated-inputs (list r-expint))
@@ -31332,14 +31332,14 @@ Complete access to optimized C functions is made available with
 (define-public r-openmx
   (package
     (name "r-openmx")
-    (version "2.21.8")
+    (version "2.21.10")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "OpenMx" version))
        (sha256
         (base32
-         "1vvlb9q3w6i6g7kf0r5jnrlmdxskh3rbfss90icand046rl37qdz"))))
+         "1kll5iim5l71dxkjd8y9ma1494818j369gp92qdsy3x6lxy244ym"))))
     (properties `((upstream-name . "OpenMx")))
     (build-system r-build-system)
     (propagated-inputs
@@ -31532,14 +31532,14 @@ network, tree, dendrogram, and Sankey graphs from R using data frames.")
 (define-public r-qgraph
   (package
     (name "r-qgraph")
-    (version "1.9.5")
+    (version "1.9.8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "qgraph" version))
        (sha256
         (base32
-         "1mi19bjx83zb42wmgb716a3l4gvwch3rmybdqmm8k3dl8xr2qnjc"))))
+         "1m019j5nxc0184p0r2zgdn457g555nxsp2s08maa053nydj1va0l"))))
     (properties `((upstream-name . "qgraph")))
     (build-system r-build-system)
     (propagated-inputs
@@ -34256,14 +34256,14 @@ aggregation for comparing different implementations in order to provide a
 (define-public r-rfast
   (package
     (name "r-rfast")
-    (version "2.0.9")
+    (version "2.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Rfast" version))
        (sha256
         (base32
-         "12jl5kqjn571zcqh4n351d7nx86b3jh46ds8krqz92f0z6fjmkzz"))))
+         "1zqq4k85i0nbzndkh0iiq3k83ly0mpl3pn4wkka6qxfvk6n6rr7r"))))
     (properties `((upstream-name . "Rfast")))
     (build-system r-build-system)
     (propagated-inputs
@@ -35147,14 +35147,14 @@ and regression metrics (e.g., RMSE).")
 (define-public r-warp
   (package
     (name "r-warp")
-    (version "0.2.0")
+    (version "0.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "warp" version))
        (sha256
         (base32
-         "0s0acddc5h14245hi1faycxp0fyvw6nlgaz2df7da4fpyd2f638f"))))
+         "1gj65kgs7x63f6y2vnv13k293b52k4afbmdlcam635h9vs8da2h2"))))
     (properties `((upstream-name . "warp")))
     (build-system r-build-system)
     (native-inputs (list r-knitr))
@@ -36208,21 +36208,23 @@ other R users.")
 (define-public r-seurat
   (package
     (name "r-seurat")
-    (version "4.4.0")
+    (version "5.0.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "Seurat" version))
               (sha256
                (base32
-                "1pdlvjh5xs1fyj2zic98sfz9zazbb45qywfqnhfzqb34jyaxy5qg"))))
+                "1hvqxfskwpw06dxc9hc9zvxqb73wr7qjxgrqgyjklxaq1xhr335v"))))
     (properties `((upstream-name . "Seurat")))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cluster
            r-cowplot
+           r-fastdummies
            r-fitdistrplus
            r-future
            r-future-apply
+           r-generics
            r-ggplot2
            r-ggrepel
            r-ggridges
@@ -36233,6 +36235,7 @@ other R users.")
            r-jsonlite
            r-kernsmooth
            r-leiden
+           r-lifecycle
            r-lmtest
            r-mass
            r-matrix
@@ -36249,10 +36252,12 @@ other R users.")
            r-rcpp
            r-rcppannoy
            r-rcppeigen
+           r-rcpphnsw
            r-rcppprogress
            r-reticulate
            r-rlang
            r-rocr
+           r-rspectra
            r-rtsne
            r-scales
            r-scattermore
@@ -37008,14 +37013,14 @@ vector machines, and gradient boosting.")
 (define-public r-bbotk
   (package
     (name "r-bbotk")
-    (version "0.7.2")
+    (version "0.7.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bbotk" version))
        (sha256
         (base32
-         "1gw0rkbiv93ifl9110r9sr0p9g4vg7qc11mznmmjq0a5vzmqgpm9"))))
+         "1ddr5w7n68d3imcrm0ipgk1waml8zj4szi566dmmiqvlpzpgdr3p"))))
     (properties `((upstream-name . "bbotk")))
     (build-system r-build-system)
     (propagated-inputs
@@ -37269,14 +37274,14 @@ chunks.")
 (define-public r-clustree
   (package
     (name "r-clustree")
-    (version "0.5.0")
+    (version "0.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "clustree" version))
        (sha256
         (base32
-         "1haam13aifak8fladyxwa0gz56anj1zfczfjgs07gbw90kf6azx8"))))
+         "05yizn8hcf4nsibypxahp2mz64sy10vli776mi0d2gvfb5p4kwmm"))))
     (properties `((upstream-name . "clustree")))
     (build-system r-build-system)
     (propagated-inputs
@@ -39346,14 +39351,14 @@ fully reproducible.")
 (define-public r-paws-common
   (package
     (name "r-paws-common")
-    (version "0.6.2")
+    (version "0.6.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "paws.common" version))
        (sha256
         (base32
-         "1jgls5fks9s8m616qs6b7hvv0wf7nhzajyds15hnlasqwg387h3d"))))
+         "1pzgwljrk3maxcbmiy3yiccijm6c2ach8f9kzpqr7w5k5vkyhpvx"))))
     (properties `((upstream-name . "paws.common")))
     (build-system r-build-system)
     (propagated-inputs
@@ -40410,17 +40415,17 @@ formatting and delivering log messages with low overhead.")
 (define-public r-fasterize
   (package
     (name "r-fasterize")
-    (version "1.0.4")
+    (version "1.0.5")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "fasterize" version))
         (sha256
-          (base32 "1ckxi2iyxdahhgbliblcrkzziblfagzr54srjk27yp1lcgivvvs4"))))
+          (base32 "1d63q77hfbn2ly8cwsik4gaavdhidpi7idf7qj2y5bi9xhd10kyl"))))
     (properties `((upstream-name . "fasterize")))
     (build-system r-build-system)
     (propagated-inputs
-      (list r-raster r-rcpp r-rcpparmadillo r-sp))
+      (list r-raster r-rcpp r-rcpparmadillo r-wk))
     (native-inputs (list r-knitr))
     (home-page "https://github.com/ecohealthalliance/fasterize")
     (synopsis "Fast Polygon to Raster Conversion")
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 3eeee9fadf..f0ea100c3b 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -5001,7 +5001,9 @@ The drivers officially supported by @code{libdbi} are:
      `(#:configure-flags
        ;; C++11 (-DSOCI_CXX11) is OFF by default.  hyperledger-iroha needs it.
        (list "-DCMAKE_CXX_STANDARD=17"
-             "-DSOCI_LIBDIR=lib")
+             "-DSOCI_LIBDIR=lib"
+             ;; This is for relocation when linking statically
+             "-DCMAKE_CXX_FLAGS=-fPIE")
        #:tests? #f))         ; may require running database management systems
     (synopsis "C++ Database Access Library")
     (description
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index be7ffd1f37..90fe9fceeb 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -8393,7 +8393,7 @@ for Flow files.")
     (inputs
      (list grammalecte python))
     (propagated-inputs
-     (list emacs-flycheck))
+     (list emacs-flycheck emacs-pkg-info))
     (home-page "https://git.umaneti.net/flycheck-grammalecte/")
     (synopsis "Integrate Grammalecte with Flycheck")
     (description
@@ -9992,8 +9992,8 @@ in @code{html-mode}.")
 
 (define-public emacs-slime
   ;; Update together with sbcl-slime-swank.
-  (let ((commit "0cc2e736112a0bc2a048ef6efd11dd67e3fbf7ad")
-        (revision "0"))
+  (let ((commit "735258a26bb97e85d25f39e4bef83c1f80c12f5d")
+        (revision "1"))
     (package
       (name "emacs-slime")
       (version (git-version "2.28" revision commit))
@@ -10005,7 +10005,7 @@ in @code{html-mode}.")
                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "0iq9r4007rrnabj290y79i926x2m4j20j6b0x701pkywz926sn02"))))
+          (base32 "0prskgzfqjmn8sc7p9nklnd0n1plwcvh40slgh23km31raplmzk7"))))
       (build-system emacs-build-system)
       (arguments
        (list
@@ -27115,7 +27115,7 @@ them in your web browser.")
 (define-public emacs-srht
   (package
     (name "emacs-srht")
-    (version "0.2")
+    (version "0.4")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -27124,7 +27124,7 @@ them in your web browser.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "10271yp9w9z27gjjpb7bnsqcrhqyvggrbmic6x1nlrn06vin1qkz"))))
+                "1kwc792r0kmnb7xhmggjgs8ii14c2rng9ci2k2zwy2zxqm0bynns"))))
     (build-system emacs-build-system)
     (arguments
      (list
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index b43e058af4..c533997027 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -1092,7 +1092,7 @@ Emacs).")
 (define-public kicad
   (package
     (name "kicad")
-    (version "7.0.8")
+    (version "7.0.9")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1100,7 +1100,7 @@ Emacs).")
                     (commit version)))
               (sha256
                (base32
-                "1gaj833hm3avyb7gyjnl4jk9cckcmj8084y6q45ysjvh283rxsy4"))
+                "1hq9rba1gcks14zwbr8nbicpsil4imslgfch6ll33fhizbks3fq4"))
               (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (arguments
@@ -1200,7 +1200,7 @@ electrical diagrams), gerbview (viewing Gerber files) and others.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1ya9kwcbsh8cqbinjr1hr14sd0g6rls1awmvw8hwd7715f97x8fg"))))
+                "14dg99fvl6av9sn6gig6d6k1sdcf2svxy4fipqcz994z2khhz1sj"))))
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags (list "-DBUILD_FORMATS=html")
@@ -1234,7 +1234,7 @@ electrical diagrams), gerbview (viewing Gerber files) and others.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "176zb7df25vz3wbhs94plmpabcgzxsnzbqmpdyssqr7m2wb2424a"))))
+                "0ynsnjq3z126cjkgm1fjbjvdvpc0walnr42ya9dv46l27kxy2j77"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f))                    ; no tests exist
@@ -1263,7 +1263,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1560m5mwwq0jrjhr8zdh2xrm1w7pgr250p81xzhdc4wj7zsb0rrp"))))
+                "16a4c2xs4i8wbm01a901yxabxk0qdsjkzlccfawddv82bkh4b87h"))))
     (synopsis "Official KiCad footprint libraries")
     (description "This package contains the official KiCad footprint libraries.")))
 
@@ -1280,7 +1280,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1ypy2nzs1x8i98jr5kmlxfd6y592qs22aq73yl8nq0s6640fc4kk"))))
+                "1cly28vc07i54v487zbb8d1h70nrd3naxvq146b0xnbrjwnd2q28"))))
     (synopsis "Official KiCad 3D model libraries")
     (description "This package contains the official KiCad 3D model libraries.")))
 
diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index b6b2e5176c..f41b4e99ed 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -46,7 +46,7 @@
 (define-public opensm
   (package
     (name "opensm")
-    (version "3.3.22")
+    (version "3.3.24")
     (source
      (origin
        (method url-fetch)
@@ -54,7 +54,7 @@
         (string-append "https://github.com/linux-rdma/opensm/releases/download/"
                        version "/opensm-" version ".tar.gz"))
        (sha256
-        (base32 "19scwwpwqhqsyq4hbr5cflcmypss828lalxxd36yby7mbimca38y"))))
+        (base32 "0q74sx8y23h7picdzb4g5r84wcvc9hr9vzsdawkl812b38vmwcx3"))))
     (build-system gnu-build-system)
     (native-inputs
      (list bison
@@ -66,18 +66,20 @@
     (inputs
      (list rdma-core))
     (arguments
-     `(#:configure-flags '("--disable-static")
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'install 'install-doc
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((base (assoc-ref outputs "out"))
-                    (doc  (string-append base "/share/doc/"
-                                         ,name "-" ,version)))
-               (for-each (lambda (file)
-                           (install-file file doc))
-                         (find-files "doc"))
-               #t))))))
+     (list
+      #:configure-flags #~'("--disable-static")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'install 'install-doc
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((base (assoc-ref outputs "out"))
+                     (doc (string-append base "/share/doc/"
+                                         #$(package-name this-package)
+                                         "-"
+                                         #$(package-version this-package))))
+                (for-each (lambda (file)
+                            (install-file file doc))
+                          (find-files "doc"))))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
     (description "\
@@ -183,7 +185,7 @@ testing InfiniBand networks.")
 (define-public ucx
   (package
     (name "ucx")
-    (version "1.14.0")
+    (version "1.15.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -193,7 +195,7 @@ testing InfiniBand networks.")
               (patches (search-patches "ucx-tcp-iface-ioctl.patch"))
               (sha256
                (base32
-                "0ki2r768wqm92qv06wxrh3kv2nl2yj4ds9fz0s0b5rr2ycjiw9ir"))))
+                "1mk46vyfp8hsivk88s8gv0nf458jfs59fczpf66wwa3a9yp324jp"))))
     (build-system gnu-build-system)
     (arguments
      (list
diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm
index 6a93ab933e..e5d0c4ea9b 100644
--- a/gnu/packages/gnuzilla.scm
+++ b/gnu/packages/gnuzilla.scm
@@ -546,9 +546,9 @@ variable defined below.  It requires guile-json to be installed."
 ;; XXXX: Workaround 'snippet' limitations.
 (define computed-origin-method (@@ (guix packages) computed-origin-method))
 
-(define %icecat-base-version "115.4.0")
+(define %icecat-base-version "115.5.0")
 (define %icecat-version (string-append %icecat-base-version "-guix0-preview1"))
-(define %icecat-build-id "20231024000000") ;must be of the form YYYYMMDDhhmmss
+(define %icecat-build-id "20231121000000") ;must be of the form YYYYMMDDhhmmss
 
 ;; 'icecat-source' is a "computed" origin that generates an IceCat tarball
 ;; from the corresponding upstream Firefox ESR tarball, using the 'makeicecat'
@@ -568,12 +568,12 @@ variable defined below.  It requires guile-json to be installed."
                   "firefox-" upstream-firefox-version ".source.tar.xz"))
             (sha256
              (base32
-              "0ndf8b6qj0f178k5yq9s9mjgj9csb62f0igy74dzj28vlgrxn7y3"))))
+              "0a578r4kri7jdw8pkkzp7f1mm9idlk7sjxjghcb08k5p14172gyv"))))
 
          ;; The upstream-icecat-base-version may be older than the
          ;; %icecat-base-version.
-         (upstream-icecat-base-version "115.4.0")
-         (gnuzilla-commit "5b2ce0c4cefc73f996f260edfac368ecc3d86b24")
+         (upstream-icecat-base-version "115.5.0")
+         (gnuzilla-commit "bd66797f3bb057c9d051d4276d63843b4d7ee854")
          (gnuzilla-source
           (origin
             (method git-fetch)
@@ -585,7 +585,7 @@ variable defined below.  It requires guile-json to be installed."
                                       (string-take gnuzilla-commit 8)))
             (sha256
              (base32
-              "13a0rv6b2vcf2mv7bfbb0rlx08pi0bz29dig0xrfdy3m1p39apla"))))
+              "0v3ckm8yv566f2y9a2bfzakbsk529f1ykr7dj69kb9k93dgny3ja"))))
 
          ;; 'search-patch' returns either a valid file name or #f, so wrap it
          ;; in 'assume-valid-file-name' to avoid 'local-file' warnings.
diff --git a/gnu/packages/haskell-apps.scm b/gnu/packages/haskell-apps.scm
index ac22082088..3288b0d0a9 100644
--- a/gnu/packages/haskell-apps.scm
+++ b/gnu/packages/haskell-apps.scm
@@ -294,13 +294,17 @@ to @code{cabal repl}).")
 (define-public git-annex
   (package
     (name "git-annex")
-    (version "10.20230828")
+    (version "10.20230926")
     (source
      (origin
-       (method url-fetch)
-       (uri (hackage-uri "git-annex" version))
+       ;; hackage release doesn't include everything needed for extra bits.
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://git.joeyh.name/git/git-annex.git")
+              (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "0pb6834dwjs9kdki977rfkdyg58dfzy8wfwvswrz3n7h6bcnjd0b"))))
+        (base32 "0zsq686b0q7mlkybm1xrc0kpl32ymvf0ybar01p68wx800031b2b"))))
     (build-system haskell-build-system)
     (properties '((upstream-name . "git-annex")))
     (arguments
@@ -348,16 +352,7 @@ to @code{cabal repl}).")
              (invoke "runhaskell" "PreConf.hs")))
          (add-after 'build 'build-manpages
            (lambda _
-             ;; The Setup.hs rewrite above removed custom code for building
-             ;; the man pages.  In addition to that code, git-annex's source
-             ;; tree has a file that's not included in the tarball but is used
-             ;; by the Makefile to build man pages.  Copy the core bits here.
-             (call-with-output-file "Build/MakeMans.hs"
-               (lambda (out)
-                 (format out "module Main where~%")
-                 (format out "import Build.Mans~%")
-                 (format out "main = buildMansOrWarn~%")))
-             (invoke "runhaskell" "Build/MakeMans.hs")))
+             (invoke "make" "mans")))
          (replace 'check
            (lambda* (#:key tests? #:allow-other-keys)
              ;; We need to set the path so that Git recognizes
@@ -373,13 +368,27 @@ to @code{cabal repl}).")
              ;; Undo `patch-shell-for-tests'.
              (copy-file "/tmp/Shell.hs" "Utility/Shell.hs")
              (apply (assoc-ref %standard-phases 'build) args)))
-         (add-after 'install 'install-manpages
+         (add-after 'install 'install-more
            (lambda* (#:key outputs #:allow-other-keys)
-             (let ((man (string-append (assoc-ref outputs "out")
-                                       "/man/man1/")))
-               (mkdir-p man)
-               (for-each (lambda (file) (install-file file man))
-                         (find-files "man")))))
+             (let* ((out (assoc-ref outputs "out"))
+                    (bash (string-append out "/etc/bash_completions.d"))
+                    (fish (string-append out "/share/fish/vendor_completions.d"))
+                    (zsh (string-append out "/share/zsh/site-functions")))
+             (setenv "PREFIX" out)
+             (invoke "make" "install-mans")
+             (mkdir-p bash)
+             (copy-file "bash-completion.bash"
+                        (string-append bash "/git-annex"))
+             (mkdir-p fish)
+             (with-output-to-file (string-append fish "/git-annex.fish")
+               (lambda _
+                 (invoke (string-append out "/bin/git-annex")
+                         "--fish-completion-script" "git-annex")))
+             (mkdir-p zsh)
+             (with-output-to-file (string-append zsh "/_git-annex")
+               (lambda _
+                 (invoke (string-append out "/bin/git-annex")
+                         "--zsh-completion-script" "git-annex"))))))
          (add-after 'install 'install-symlinks
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
@@ -406,13 +415,16 @@ to @code{cabal repl}).")
            ghc-cryptonite
            ghc-data-default
            ghc-dav
+           ghc-dbus
            ghc-disk-free-space
            ghc-dlist
            ghc-edit-distance
            ghc-exceptions
+           ghc-fdo-notify
            ghc-feed
            ghc-filepath-bytestring
            ghc-free
+           ghc-git-lfs
            ghc-hinotify
            ghc-http-client
            ghc-http-client-tls
diff --git a/gnu/packages/haskell-xyz.scm b/gnu/packages/haskell-xyz.scm
index 676cdfa912..5d9e5757a0 100644
--- a/gnu/packages/haskell-xyz.scm
+++ b/gnu/packages/haskell-xyz.scm
@@ -3913,6 +3913,27 @@ when used with GHC versions which already provide the
     (description "This library provides a fast logging system for Haskell.")
     (license license:bsd-3)))
 
+(define-public ghc-fdo-notify
+  (package
+    (name "ghc-fdo-notify")
+    (version "0.3.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (hackage-uri "fdo-notify" version))
+       (sha256
+        (base32 "1n4zk1i7g34w0wk5zy8n4r63xbglxf62h8j78kv5fc2yn95l30vh"))))
+    (build-system haskell-build-system)
+    (properties '((upstream-name . "fdo-notify")))
+    (inputs (list ghc-dbus))
+    (home-page "http://bitbucket.org/taejo/fdo-notify/")
+    (synopsis "Desktop Notifications client")
+    (description
+     "This package provides a library for issuing notifications using
+@code{FreeDesktop.org's} Desktop Notifications protcol.  This protocol is
+supported by services such as Ubuntu's @code{NotifyOSD}.")
+    (license license:bsd-3)))
+
 (define-public ghc-feed
   (package
     (name "ghc-feed")
@@ -15683,6 +15704,25 @@ purposes.  See the
 <https://www.stackage.org/package/githash>")
     (license license:bsd-3)))
 
+(define-public ghc-git-lfs
+  (package
+    (name "ghc-git-lfs")
+    (version "1.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (hackage-uri "git-lfs" version))
+       (sha256
+        (base32 "1iv3s1c7gwmsima9z3rsphjligpnf7h3vc5c96zgq9b71cx81lba"))))
+    (build-system haskell-build-system)
+    (properties '((upstream-name . "git-lfs")))
+    (inputs (list ghc-http-client ghc-http-types ghc-aeson ghc-network-uri
+                  ghc-case-insensitive))
+    (home-page "http://hackage.haskell.org/package/git-lfs")
+    (synopsis "git-lfs protocol")
+    (description "An implementation of the git-lfs protocol.")
+    (license license:agpl3)))
+
 (define-public ghc-nothunks
   (package
     (name "ghc-nothunks")
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 641d1cd113..2024163a08 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -6749,7 +6749,7 @@ from the ntfs-3g package.  It is meant to be used in initrds.")
 (define-public rdma-core
   (package
     (name "rdma-core")
-    (version "44.0")
+    (version "48.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/linux-rdma/rdma-core"
@@ -6757,7 +6757,7 @@ from the ntfs-3g package.  It is meant to be used in initrds.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "12w5v74wz1akac09frw7qk1yd06b00239zh7bvbvqyzjc0g61mi5"))))
+                "0h281dw2yph8pzfsr1wblqy6pb8nd9yj1pdf5c62zwc1l9b2fa3q"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ;no tests
@@ -8572,7 +8572,7 @@ comparing system environments.")
 (define-public libfabric
   (package
     (name "libfabric")
-    (version "1.11.2")
+    (version "1.19.0")
     (source
      (origin
        (method url-fetch)
@@ -8580,7 +8580,7 @@ comparing system environments.")
         (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
                        version "/libfabric-" version ".tar.bz2"))
        (sha256
-        (base32 "1nnpfkwxhim2nqjkb1vwrb4wj4j3l6w6yvvy69fqam2snlhshazz"))))
+        (base32 "17pg0fb4fa77r1bmp0xk535m8n8fadpfdg93cb280ghhx55pck7i"))))
     (build-system gnu-build-system)
     (inputs `(("rdma-core" ,rdma-core)
               ,@(match (%current-system)
@@ -8861,16 +8861,17 @@ privileges.")
 (define-public psm2
   (package
     (name "psm2")
-    (version "11.2.230")
+    (version "12.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://github.com/intel/opa-psm2")
-                    (commit (string-append "PSM2_" version))))
+                    ;; tag 'psm-v12.0' = commit ad5dd1b
+                    (commit (string-append "psm-v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1bm7ndhi8qzmd0plnggj2h52yb34bab4k38530nsnkmv9smwdivl"))))
+                "04nar65ac11qqx41vkfs7iip8kfiah0zms7l4rmsxncpiz2iqfik"))))
     (build-system gnu-build-system)
     (arguments
      (list #:make-flags
diff --git a/gnu/packages/lisp-check.scm b/gnu/packages/lisp-check.scm
index cbbc8c3979..63a16d608c 100644
--- a/gnu/packages/lisp-check.scm
+++ b/gnu/packages/lisp-check.scm
@@ -356,11 +356,11 @@ experience.")
   (sbcl-package->ecl-package sbcl-clunit))
 
 (define-public sbcl-clunit2
-  (let ((commit "c3159275a6c5af166e60b592c3b7e22eaa69c048")
+  (let ((commit "b24c56851ee6ee6c4a9dc3725a634c06b604f207")
         (revision "2"))
     (package
       (name "sbcl-clunit2")
-      (version (git-version "0.5.2" revision commit))
+      (version (git-version "0.6.1" revision commit))
       (source
        (origin
          (method git-fetch)
@@ -369,7 +369,7 @@ experience.")
                (commit commit)))
          (file-name (git-file-name "cl-clunit2" version))
          (sha256
-          (base32 "0n92z98dqfik3kfp25nz7yqycx4bpxlqbn69i5skcdnrj2ywmv01"))))
+          (base32 "03k4wc2zz31wcqcxy8fhq095i8xzcaxrzgrlrn2va10lcjs4v51b"))))
       (build-system asdf-build-system/sbcl)
       (synopsis "Unit testing framework for Common Lisp")
       (description
diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm
index 7f00a08203..4bc3c71a54 100644
--- a/gnu/packages/lisp-xyz.scm
+++ b/gnu/packages/lisp-xyz.scm
@@ -3607,8 +3607,8 @@ writing code that contains string literals that contain code themselves.")
   (sbcl-package->ecl-package sbcl-pythonic-string-reader))
 
 (define-public sbcl-slime-swank
-  (let ((commit "0cc2e736112a0bc2a048ef6efd11dd67e3fbf7ad")
-        (revision "0"))
+  (let ((commit "735258a26bb97e85d25f39e4bef83c1f80c12f5d")
+        (revision "1"))
     (package
       (name "sbcl-slime-swank")
       (version (git-version "2.28" revision commit))
@@ -3620,7 +3620,7 @@ writing code that contains string literals that contain code themselves.")
                (url "https://github.com/slime/slime/")
                (commit commit)))
          (sha256
-          (base32 "0iq9r4007rrnabj290y79i926x2m4j20j6b0x701pkywz926sn02"))
+          (base32 "0prskgzfqjmn8sc7p9nklnd0n1plwcvh40slgh23km31raplmzk7"))
          (modules '((guix build utils)))
          (snippet
           ;; The doc folder drags `gawk' into the closure.  Doc is already
@@ -12132,6 +12132,50 @@ for reading and writing JPEG image files.")
 (define-public ecl-cl-jpeg
   (sbcl-package->ecl-package sbcl-cl-jpeg))
 
+(define-public sbcl-jpeg-turbo
+  (let ((commit "f79c646cc266c107bdace53572a31664754c6e0c")
+        (revision "1"))
+    (package
+      (name "sbcl-jpeg-turbo")
+      (version (git-version "1.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/shamazmazum/jpeg-turbo/")
+               (commit commit)))
+         (file-name (git-file-name "cl-jpeg-turbo" version))
+         (sha256
+          (base32 "1andd1ibbk3224idnpsnrn96flr5d1wm9ja3di57fs04wn577sag"))))
+      (build-system asdf-build-system/sbcl)
+      (arguments
+       (list #:phases
+             #~(modify-phases %standard-phases
+                 (add-after 'unpack 'fix-lib-paths
+                   (lambda* (#:key inputs #:allow-other-keys)
+                     (substitute* "src/jpeg-turbo.lisp"
+                       (("\"libturbojpeg\\.so\\.0\"")
+                        (string-append "\""
+                                       (search-input-file inputs
+                                                          "/lib/libturbojpeg.so")
+                                       "\""))))))))
+      (native-inputs
+       (list sbcl-fiveam))
+      (inputs
+       (list libjpeg-turbo sbcl-cffi))
+      (synopsis "Common Lisp wrapper for libjpeg-turbo")
+      (description
+       "This is a Common Lisp wrapper for libjpeg-turbo library which provides
+TurboJPEG API for compressing and decompressing JPEG images.")
+      (home-page "https://github.com/shamazmazum/jpeg-turbo/")
+      (license license:bsd-2))))
+
+(define-public cl-jpeg-turbo
+  (sbcl-package->cl-source-package sbcl-jpeg-turbo))
+
+(define-public ecl-cl-jpeg-turbo
+  (sbcl-package->ecl-package sbcl-jpeg-turbo))
+
 (define-public sbcl-png
   (let ((commit "11b965fe378fd0561abe3616b18ff03af5179648")
         (revision "1"))
@@ -12206,11 +12250,11 @@ Scalable Vector Graphics files.")
   (sbcl-package->cl-source-package sbcl-cl-svg))
 
 (define-public sbcl-nodgui
-  (let ((commit "b1d15fa9cca8550926f7823dbdd8be3b34387f1a")
-        (revision "2"))
+  (let ((commit "6baccf45371afd4dcc8cd3f38332b300614783b6")
+        (revision "1"))
     (package
       (name "sbcl-nodgui")
-      (version (git-version "0.4.8.5" revision commit))
+      (version (git-version "0.4.8.6" revision commit))
       (source
        (origin
          (method git-fetch)
@@ -12219,19 +12263,20 @@ Scalable Vector Graphics files.")
                (commit commit)))
          (file-name (git-file-name "cl-nodgui" version))
          (sha256
-          (base32 "1gsxg8igiavs8fr39vgw8ypa42wjqaq9sszwqiifpm7yvq54lls7"))))
+          (base32 "0fjz8362qmvkbzj9ylyllkdxg7vvj38l3y5qn4xi2gim92x4lx67"))))
       (build-system asdf-build-system/sbcl)
       (inputs
        (list sbcl-alexandria
              sbcl-bordeaux-threads
              sbcl-cl-colors2
-             sbcl-cl-jpeg
              sbcl-cl-ppcre-unicode
              sbcl-cl-unicode
              sbcl-clunit2
              sbcl-esrap
+             sbcl-jpeg-turbo
              sbcl-named-readtables
              sbcl-parse-number
+             sbcl-pngload
              tk
              tklib))
       (arguments
@@ -18847,7 +18892,7 @@ HTML documents.")
   (sbcl-package->cl-source-package sbcl-cl-html-diff))
 
 (define-public sbcl-tooter
-  (let ((commit "2e1b22f0993419c1e7e6d10ead45d7bcafb5b6cb")
+  (let ((commit "2dcc2facddcacd79d0cce545a8c4b73c35826fc1")
         (revision "4"))
     (package
       (name "sbcl-tooter")
@@ -18860,10 +18905,13 @@ HTML documents.")
                (commit commit)))
          (file-name (git-file-name "cl-tooter" version))
          (sha256
-          (base32 "02ys58gzasvk7r84jmz6k522qcw2hkbgv8p0ax5i8dggjhr04cz2"))))
+          (base32 "1zisrmslj4rnibm02vxh7hbas2cfsjh6iizs2nfdg3a3pn7bhf6h"))))
       (build-system asdf-build-system/sbcl)
       (inputs
-       (list sbcl-cl-ppcre sbcl-documentation-utils sbcl-drakma
+       (list sbcl-alexandria
+             sbcl-cl-ppcre
+             sbcl-documentation-utils
+             sbcl-drakma
              sbcl-yason))
       (synopsis "Common Lisp client library for Mastodon instances")
       (description
@@ -18881,7 +18929,7 @@ protocol for Mastodon.")
 (define-public sbcl-croatoan
   (package
     (name "sbcl-croatoan")
-    (version "0.1")
+    (version "0.2")
     (source
      (origin
        (method git-fetch)
@@ -18890,7 +18938,7 @@ protocol for Mastodon.")
              (commit (string-append "v" version))))
        (file-name (git-file-name "cl-croatoan" version))
        (sha256
-        (base32 "1whbvwc4df7zz0002xy3aczrpf4s3vk6kmyh9wydgwl112h060pd"))))
+        (base32 "0x2rlckyn8kn5mqy0fib8piggz694g3naarz2dvha1hsy4jhb1wg"))))
     (build-system asdf-build-system/sbcl)
     (arguments
      '(#:phases
diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index f26362c79f..8fccee94dc 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -1247,7 +1247,7 @@ including a built-in database engine and a GUI system.")
 (define-public janet
   (package
     (name "janet")
-    (version "1.29.1")
+    (version "1.32.1")
     (source
      (origin
        (method git-fetch)
@@ -1256,7 +1256,7 @@ including a built-in database engine and a GUI system.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "18684mxnb0jk63mkzi36zlmd8rjjv0msx3xxpmn67mhrnwz4x861"))))
+        (base32 "1nnqbpql6749597m0lp56i2zqm003pg690399l0g8kb9kwvpv1yv"))))
     (build-system gnu-build-system)
     (arguments
      (list #:make-flags
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index a84377e1eb..7d833005bc 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1663,45 +1663,42 @@ and forecasting.")
 (define-public python-imbalanced-learn
   (package
     (name "python-imbalanced-learn")
-    (version "0.9.1")
-    (source (origin
-              (method url-fetch)
-              (uri (pypi-uri "imbalanced-learn" version))
-              (sha256
-               (base32
-                "0qnrmysnqpc8ii1w5n8mci20gcjhmjr7khvk7f2apdbqc2pgf52f"))))
+    (version "0.11.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "imbalanced-learn" version))
+       (sha256
+        (base32 "1p4gdgc8nsq0vjmw4y4d2bp9g0m1c23d0zgrzs90pnz6b24ax0km"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'unbreak-tests
-           (lambda _
-             ;; The doctests require tensorflow
-             (substitute* "setup.cfg"
-               (("--doctest-modules") ""))
-             ;; Some tests require a home directory
-             (setenv "HOME" (getcwd))
-             ;; We don't have keras
-             (delete-file "imblearn/keras/tests/test_generator.py")
-             ;; We don't have tensorflow
-             (delete-file "imblearn/tensorflow/tests/test_generator.py"))))))
-    (propagated-inputs
-     (list python-joblib
-           python-numpy
-           python-scikit-learn
-           python-scipy
-           python-threadpoolctl))
-    (native-inputs
-     (list python-black
-           python-flake8
-           python-mypy
-           python-pandas
-           python-pytest
-           python-pytest-cov))
+      #:test-flags '(list "-k"
+                     ;; Although we cannot satify the Tensorflow and Keras requirements
+                     ;; (python-keras >= 2.4.3 and tensorflow >= 2.4.3), all tests
+                     ;; besides these pass.
+                     "not balanced_batch_generator and not BalancedBatchGenerator")
+      #:phases '(modify-phases %standard-phases
+                  (add-after 'unpack 'unbreak-tests
+                    (lambda _
+                      ;; Some tests require a home directory
+                      (setenv "HOME"
+                              (getcwd)))))))
+    (propagated-inputs (list python-joblib python-numpy python-scikit-learn
+                             python-scipy python-threadpoolctl))
+    (native-inputs (list python-black
+                         python-flake8
+                         python-keras
+                         python-mypy
+                         python-numpydoc
+                         python-pandas
+                         python-pytest
+                         python-pytest-cov
+                         tensorflow))
     (home-page "https://github.com/scikit-learn-contrib/imbalanced-learn")
     (synopsis "Toolbox for imbalanced dataset in machine learning")
-    (description "This is a Python package offering a number of re-sampling
+    (description
+     "This is a Python package offering a number of re-sampling
 techniques commonly used in datasets showing strong between-class imbalance.
 It is compatible with @code{scikit-learn}.")
     (license license:expat)))
diff --git a/gnu/packages/mastodon.scm b/gnu/packages/mastodon.scm
index 44f8664997..cbeccdb402 100644
--- a/gnu/packages/mastodon.scm
+++ b/gnu/packages/mastodon.scm
@@ -119,6 +119,7 @@ Features include:
      (list gdk-pixbuf ; so pixbuf loader cache (for webp) is generated
            gettext-minimal
            `(,glib "bin") ; for glib-compile-resources
+           gsettings-desktop-schemas    ; for the org.gnome.system.proxy schema
            pkg-config))
     (inputs
      (list gst-plugins-bad
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index ed1708c77b..34710fc65c 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -7593,60 +7593,65 @@ symmetric matrices.")
     (synopsis "Eigenvalue solvers for symmetric matrices (with MPI support)")))
 
 (define-public elemental
-  (package
-    (name "elemental")
-    (version "0.87.7")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/elemental/Elemental")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1687xpjjzig27y2pnqv7hv09smpijyfdpz7qjgmcxf4shfajlfkc"))))
-    (build-system cmake-build-system)
-    (home-page "https://github.com/elemental/Elemental")
-    (native-inputs
-     (list gfortran))
-    (inputs
-     `(("blas" ,openblas)
-       ("gfortran:lib" ,gfortran "lib")
-       ("gmp" ,gmp)
-       ("lapack" ,lapack)
-       ("metis" ,metis)
-       ("mpc" ,mpc)
-       ("mpfr" ,mpfr)
-       ("mpi" ,openmpi)
-       ("qd" ,qd)))
-    (arguments
-     `(#:build-type "Release"           ;default RelWithDebInfo not supported
-       #:configure-flags `("-DEL_DISABLE_PARMETIS:BOOL=YES"
-                           "-DEL_AVOID_COMPLEX_MPI:BOOL=NO"
-                           "-DEL_CACHE_WARNINGS:BOOL=YES"
-                           "-DEL_TESTS:BOOL=YES"
-                           "-DCMAKE_INSTALL_LIBDIR=lib"
-                           "-DGFORTRAN_LIB=gfortran")
-       #:phases (modify-phases %standard-phases
-                  (add-before 'check 'mpi-setup
-                    ,%openmpi-setup)
-                  (add-before 'check 'setup-tests
-                    (lambda _
-                      ;; Parallelism is done at the MPI layer.
-                      (setenv "OMP_NUM_THREADS" "1")
-                      #t))
-                  (add-after 'install 'remove-tests
-                    (lambda* (#:key outputs #:allow-other-keys)
-                      ;; Tests are installed, with no easy configuration
-                      ;; switch to prevent this, so delete them.
-                      (delete-file-recursively
-                        (string-append (assoc-ref outputs "out") "/bin"))
-                      #t)))))
-    (synopsis "Dense and sparse-direct linear algebra and optimization")
-    (description "Elemental is a modern C++ library for distributed-memory
+  ;; The build of 0.87.7 is failed for a long time due to new version of GCC. The
+  ;; latest commit has fixes.
+  ;; See https://github.com/elemental/Elemental/issues/254
+  (let ((commit "6eb15a0da2a4998bf1cf971ae231b78e06d989d9")
+        (revision "0"))
+    (package
+      (name "elemental")
+      (version (git-version "0.87.7" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/elemental/Elemental")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "06xcs4ic60ndcf2hq19gr8yjwdsnphpcyhapab41rkw726z4lm7p"))))
+      (build-system cmake-build-system)
+      (arguments
+       (list
+        #:build-type "Release" ;default RelWithDebInfo not supported
+        #:configure-flags
+        #~(list "-DEL_DISABLE_PARMETIS:BOOL=YES"
+                "-DEL_AVOID_COMPLEX_MPI:BOOL=NO"
+                "-DEL_CACHE_WARNINGS:BOOL=YES"
+                "-DEL_TESTS:BOOL=YES"
+                "-DCMAKE_INSTALL_LIBDIR=lib"
+                "-DGFORTRAN_LIB=gfortran")
+        #:phases
+        #~(modify-phases %standard-phases
+            (add-before 'check 'mpi-setup
+                 #$%openmpi-setup)
+            (add-before 'check 'setup-tests
+              (lambda _                ;; Parallelism is done at the MPI layer.
+                (setenv "OMP_NUM_THREADS" "1")))
+            (add-after 'install 'remove-tests
+              (lambda _
+                ;; Tests are installed, with no easy configuration
+                ;; switch to prevent this, so delete them.
+                (delete-file-recursively
+                 (string-append  #$output "/bin/test")))))))
+      (native-inputs
+       (list gfortran))
+      (inputs
+       (list `(,gfortran "lib")
+             gmp
+             lapack
+             metis
+             mpc
+             mpfr
+             openmpi
+             qd
+             openblas))
+      (home-page "https://github.com/elemental/Elemental")
+      (synopsis "Dense and sparse-direct linear algebra and optimization")
+      (description "Elemental is a modern C++ library for distributed-memory
 dense and sparse-direct linear algebra, conic optimization, and lattice
 reduction.")
-    (license license:bsd-2)))
+      (license license:bsd-2))))
 
 (define-public mcrl2
   (package
diff --git a/gnu/packages/mold.scm b/gnu/packages/mold.scm
index 1e67f80081..4ce3741be2 100644
--- a/gnu/packages/mold.scm
+++ b/gnu/packages/mold.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2023 Zhu Zihao <all_but_last@163.com>
+;;; Copyright © 2023 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -34,7 +35,7 @@
 (define-public mold
   (package
     (name "mold")
-    (version "1.10.1")
+    (version "2.3.2")
     (source
      (origin
        (method git-fetch)
@@ -43,10 +44,22 @@
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1bqv1a93n3nks38k8fdc5i7v7ca2sav8n4xxaph0ikaqw1mkjcg7"))
+        (base32 "1p6w92caysy9h0vkl26iv3viv0lvwzvbd357yykls0p13hnzlzkr"))
        (modules '((guix build utils)))
        (snippet
         #~(begin
+            ;; Fix detection of i686 systems.
+            ;; This can be removed with the next release of mold.
+            (substitute* "test/elf/common.inc"
+              (("echo i386") "echo i686"))
+            (substitute* '("test/elf/common.inc"
+                           "test/elf/global-offset-table.sh"
+                           "test/elf/i386_tls-module-base.sh"
+                           "test/elf/large-alignment-dso.sh"
+                           "test/elf/large-alignment.sh"
+                           "test/elf/nocopyreloc.sh"
+                           "test/elf/range-extension-thunk.sh")
+              (("MACHINE = i386") "MACHINE = i686"))
             (for-each
              (lambda (x)
                (delete-file-recursively (string-append "third-party/" x)))
@@ -55,7 +68,8 @@
     (arguments
      (list
       #:configure-flags #~(list "-DMOLD_USE_SYSTEM_MIMALLOC=ON"
-                                "-DMOLD_USE_SYSTEM_TBB=ON")
+                                "-DMOLD_USE_SYSTEM_TBB=ON"
+                                "-DBUILD_TESTING=ON")
       #:phases
       #~(modify-phases %standard-phases
           (add-before 'configure 'force-system-xxhash
@@ -69,6 +83,10 @@
                 (("CC=\"\\$\\{TEST_CC:-cc\\}\"") "CC=gcc")
                 (("CXX=\"\\$\\{TEST_CXX:-c\\+\\+\\}\"")
                  "CXX=g++"))))
+          (add-before 'configure 'skip-tbb-lto-test
+            (lambda _
+              ;; This test needs tbb 2021.9.0 or newer
+              (delete-file "test/elf/lto-version-script.sh")))
           (add-before 'configure 'disable-rpath-test
             (lambda _
               ;; This test fails because mold expect the RUNPATH as-is,
diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index baf6ce11e0..85afc8cefc 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -141,7 +141,7 @@ bind processes, and much more.")
 (define-public hwloc-2
   (package
     (inherit hwloc-1)
-    (version "2.9.2")
+    (version "2.9.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://download.open-mpi.org/release/hwloc/v"
@@ -149,7 +149,7 @@ bind processes, and much more.")
                                   "/hwloc-" version ".tar.bz2"))
               (sha256
                (base32
-                "1kv0n3b9knb8aawf0hxaxn9wc9bbpwh676r2gmb0pc7qfzvgv1qa"))))
+                "1v0dzzgzp40slakdwdb8vy0hy4m2ff3gnzqpzi8k8vbgap764h2w"))))
 
     ;; libnuma is no longer needed.
     (inputs (modify-inputs (package-inputs hwloc-1)
@@ -184,7 +184,7 @@ bind processes, and much more.")
 (define-public openmpi
   (package
     (name "openmpi")
-    (version "4.1.5")
+    (version "4.1.6")
     (source
      (origin
        (method url-fetch)
@@ -192,7 +192,7 @@ bind processes, and much more.")
                            (version-major+minor version)
                            "/downloads/openmpi-" version ".tar.bz2"))
        (sha256
-        (base32 "1qyvc77diyrxmviirdwqpibgm32c4vkdlvw8g79rsf2pq9mrhh56"))
+        (base32 "05g4245v0pdqcyjmgn50519ry5v5q8ig26iinmiynvaihm29jh7p"))
        (patches (search-patches "openmpi-mtl-priorities.patch"))))
 
     (properties
diff --git a/gnu/packages/multiprecision.scm b/gnu/packages/multiprecision.scm
index 3aa5dccfab..0c6255c129 100644
--- a/gnu/packages/multiprecision.scm
+++ b/gnu/packages/multiprecision.scm
@@ -10,6 +10,7 @@
 ;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
 ;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -251,30 +252,29 @@ error.  Additionally, iRRAM uses the concept of multi-valued functions.")
 (define-public qd
   (package
     (name "qd")
-    (version "2.3.23")
+    (version "2.3.24")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://crd-legacy.lbl.gov/~dhbailey/mpdist/qd-"
                            version ".tar.gz"))
        (sha256
-        (base32 "09pfd77rmy370hy7qdqw84z21y9zpl3fcwzf93rhiv0kwhfg9smk"))))
+        (base32 "0f0fwsyh23p5zfyrj6n16q7b56g213fnhdc8dbl22r3fz1rnqyx4"))))
     (build-system gnu-build-system)
-    (native-inputs
-     (list gfortran))
+    (native-inputs (list automake autoconf gfortran))
     (arguments
-     `(#:configure-flags `("--disable-enable_fma" ;weird :/
-                           "--disable-static"
-                           "--enable-shared"
-                           ,,@(if (string-prefix? "aarch64"
-                                                  (or (%current-target-system)
-                                                      (%current-system)))
-                                  ;; XXX: The qd_test test fails numerical
-                                  ;; accuracy checks for 'dd_real::exp()' on
-                                  ;; aarch64 with GCC 5.4 at -O2.  Disabling
-                                  ;; expensive optimizations lets it pass.
-                                  '("CXXFLAGS=-O3 -fno-expensive-optimizations")
-                                  '("CXXFLAGS=-O3")))))
+     (list
+      #:configure-flags
+      #~(list "--disable-enable_fma" ;weird :/
+              "--disable-static"
+              "--enable-shared"
+              #$@(if (target-aarch64?)
+                     ;; XXX: The qd_test test fails numerical
+                     ;; accuracy checks for 'dd_real::exp()' on
+                     ;; aarch64 with GCC 5.4 at -O2.  Disabling
+                     ;; expensive optimizations lets it pass.
+                     '("CXXFLAGS=-O3 -fno-expensive-optimizations")
+                     '("CXXFLAGS=-O3")))))
     (home-page "https://www.davidhbailey.com/dhbsoftware/")
     (synopsis "Double-double and quad-double library")
     (description "This package supports both a double-double
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index 85be6f6151..b5f7d882e4 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -4982,7 +4982,7 @@ includes LV2 plugins and a JACK standalone client.")
 (define-public musescore
   (package
     (name "musescore")
-    (version "4.0.2")
+    (version "4.1.1")
     (source
      (origin
        (method git-fetch)
@@ -4991,14 +4991,11 @@ includes LV2 plugins and a JACK standalone client.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1yri94xs4xw0lsvmk5q7bqnpgmdadchfn08r7bb2y07jsi8qgm6w"))
+        (base32 "12h26k9qnsq027gdpch579nchwrqva1ymwm2fj5xmlh0aayrwy4d"))
        (modules '((guix build utils)))
        (snippet
         '(begin
-           ;; Remove unused libraries...
-           (for-each delete-file-recursively
-                     '("thirdparty/freetype"))
-           ;; ... and precompiled binaries.
+           ;; Delete precompiled binaries.
            (delete-file-recursively "src/diagnostics/crashpad_handler")
            (substitute* "src/diagnostics/CMakeLists.txt"
              (("install") "#install"))))))
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 70a26c242a..4b585362a4 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1510,8 +1510,8 @@ environments.")
                   "0k9zkdyyzir3fvlbcfcqy17k28b51i20rpbjwlx2i1mwd2pw9cxc")))))))
 
 (define-public guix-build-coordinator
-  (let ((commit "34463558e589aa260b15e53422652a37848aec95")
-        (revision "90"))
+  (let ((commit "c226d48d97ce3a248cf2d814c9b4c4f48e67511e")
+        (revision "91"))
     (package
       (name "guix-build-coordinator")
       (version (git-version "0" revision commit))
@@ -1522,7 +1522,7 @@ environments.")
                       (commit commit)))
                 (sha256
                  (base32
-                  "0fhy0l9js38byxwwb72qnjm358ai3k654jdnhwdcgk25pdsdzcpr"))
+                  "0ig9hq483q2ir26gj6m9kj13a9hmq6sw18q0fiqvbvn31p4c8zvn"))
                 (file-name (string-append name "-" version "-checkout"))))
       (build-system gnu-build-system)
       (arguments
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index 2ec87e751a..f3af1680b0 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -9,7 +9,7 @@
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
-;;; Copyright © 2019-2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019-2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2021 Stefan Reichör <stefan@xsteve.at>
 ;;;
@@ -185,7 +185,7 @@ when jobs finish.")
 (define-public slurm
   (package
     (name "slurm")
-    (version "22.05.1")
+    (version "23.02.6")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -193,7 +193,7 @@ when jobs finish.")
                     version ".tar.bz2"))
               (sha256
                (base32
-                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))
+                "08rz3r1rlnb3pmfdnbh542gm44ja0fdy8rkj4vm4lclc48cvqp2a"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -281,6 +281,20 @@ by managing a queue of pending work.")
 ;; As noted in the link, YY.MM is the release scheme, and the 'maintenance'
 ;; digit does not introduce incompatibilities.
 
+(define-public slurm-22.05
+  (package
+    (inherit slurm)
+    (version "22.05.1")
+    (source (origin
+              (inherit (package-source slurm))
+              (method url-fetch)
+              (uri (string-append
+                    "https://download.schedmd.com/slurm/slurm-"
+                    version ".tar.bz2"))
+              (sha256
+               (base32
+                "0f3hhlki8g7slllsnyj1qikbsvr62i0hig85lcdcfnmsagzlhbyi"))))))
+
 (define-public slurm-21.08
   (package
     (inherit slurm)
diff --git a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
index c441a0861a..2a0e4ce138 100644
--- a/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
+++ b/gnu/packages/patches/ucx-tcp-iface-ioctl.patch
@@ -3,102 +3,121 @@ TCP network interfaces cannot be obtained via /sys/class/net.  This patch
 provides alternative code that uses the SIOCGIFCONF ioctl to get the
 names of the available TCP network interfaces.
 
+Initially submitted at <https://github.com/openucx/ucx/pull/4462>.
+
 diff --git a/src/uct/tcp/tcp_iface.c b/src/uct/tcp/tcp_iface.c
-index cad4a2709..7c1d2c9de 100644
+index 6a6cd34fa..af32bb2e9 100644
 --- a/src/uct/tcp/tcp_iface.c
 +++ b/src/uct/tcp/tcp_iface.c
-@@ -17,6 +17,8 @@
- #include <sys/poll.h>
+@@ -18,6 +18,8 @@
  #include <netinet/tcp.h>
  #include <dirent.h>
+ #include <float.h>
 +#include <net/if.h>
 +#include <sys/ioctl.h>
  
+ #define UCT_TCP_IFACE_NETDEV_DIR "/sys/class/net"
  
- extern ucs_class_t UCS_CLASS_DECL_NAME(uct_tcp_iface_t);
-@@ -586,6 +588,68 @@ static UCS_CLASS_DEFINE_NEW_FUNC(uct_tcp_iface_t, uct_iface_t, uct_md_h,
+@@ -875,6 +877,85 @@ static UCS_CLASS_DEFINE_NEW_FUNC(uct_tcp_iface_t, uct_iface_t, uct_md_h,
                                   uct_worker_h, const uct_iface_params_t*,
                                   const uct_iface_config_t*);
  
 +/* Fetch information about available network devices through an ioctl.  */
-+static ucs_status_t query_devices_ioctl(uct_md_h md,
-+					uct_tl_device_resource_t **tl_devices_p,
-+					unsigned *num_tl_devices_p)
++static ucs_status_t uct_tcp_query_devices_ioctl(uct_md_h md,
++                                                uct_tl_device_resource_t **devices_p,
++                                                unsigned *num_devices_p)
 +{
 +    int sock, err, i;
-+    uct_tl_device_resource_t *resources, *tmp;
-+    unsigned num_resources;
++    uct_tl_device_resource_t *devices, *tmp;
++    unsigned num_devices;
 +    ucs_status_t status;
 +    struct ifconf conf;
-+    struct ifreq reqs[10];
 +
-+    conf.ifc_len = sizeof reqs;
-+    conf.ifc_req = reqs;
++    conf.ifc_len = 0;
++    conf.ifc_req = NULL;
++
++    status = ucs_socket_create(AF_INET, SOCK_STREAM, &sock);
++    if (status != UCS_OK) {
++        goto out;
++    }
++
++    err = ioctl(sock, SIOCGIFCONF, &conf);
++    if (err < 0) {
++        ucs_error("ioctl(SIOCGIFCONF) failed: %m");
++        status = UCS_ERR_IO_ERROR;
++        goto out;
++    }
 +
-+    sock = socket(SOCK_STREAM, AF_INET, 0);
-+    if (sock < 0) {
-+	ucs_error("socket(2) failed: %m");
-+	status = UCS_ERR_IO_ERROR;
-+	goto out;
++    conf.ifc_req = ucs_calloc(1, conf.ifc_len, "ifreq");
++    if (conf.ifc_req == NULL) {
++        ucs_error("memory alocation failed");
++        status = UCS_ERR_NO_MEMORY;
++        goto out;
 +    }
 +
 +    err = ioctl(sock, SIOCGIFCONF, &conf);
 +    if (err < 0) {
-+	ucs_error("SIOCGIFCONF ioctl failed: %m");
-+	status = UCS_ERR_IO_ERROR;
-+	goto out;
++        ucs_error("ioctl(SIOCGIFCONF) failed: %m");
++        status = UCS_ERR_IO_ERROR;
++        goto out_free;
 +    }
 +
-+    resources     = NULL;
-+    num_resources = 0;
-+    for (i = 0; i < conf.ifc_len / sizeof(struct ifreq); i++) {
-+	const char *name = reqs[i].ifr_name;
++    devices     = NULL;
++    num_devices = 0;
++    for (i = 0; i < (conf.ifc_len / sizeof(struct ifreq)); i++) {
++        const char *name = conf.ifc_req[i].ifr_name;
++	sa_family_t family = conf.ifc_req[i].ifr_addr.sa_family;
 +
-+        if (!ucs_netif_is_active(name, AF_INET)) {
++        if (!ucs_netif_is_active(name, family)) {
 +            continue;
 +        }
 +
-+        tmp = ucs_realloc(resources, sizeof(*resources) * (num_resources + 1),
-+                          "tcp resources");
++        tmp = ucs_realloc(devices, sizeof(*devices) * (num_devices + 1),
++                          "tcp devices");
 +        if (tmp == NULL) {
-+            ucs_free(resources);
++            ucs_free(devices);
 +            status = UCS_ERR_NO_MEMORY;
-+            goto out;
++            goto out_free;
 +        }
-+        resources = tmp;
++        devices = tmp;
 +
-+        ucs_snprintf_zero(resources[i].name, sizeof(resources[i].name),
++        ucs_snprintf_zero(devices[num_devices].name,
++                          sizeof(devices[num_devices].name),
 +                          "%s", name);
-+        resources[i].type = UCT_DEVICE_TYPE_NET;
-+        ++num_resources;
++        devices[num_devices].type = UCT_DEVICE_TYPE_NET;
++        ++num_devices;
 +    }
 +
-+    *num_tl_devices_p = num_resources;
-+    *tl_devices_p     = resources;
-+    status            = UCS_OK;
++    *num_devices_p = num_devices;
++    *devices_p     = devices;
++    status         = UCS_OK;
 +
++out_free:
++    ucs_free(conf.ifc_req);
 +out:
-+    if (sock >= 0) close(sock);
++    if (sock >= 0) {
++        close(sock);
++    }
 +    return status;
 +}
 +
  ucs_status_t uct_tcp_query_devices(uct_md_h md,
                                     uct_tl_device_resource_t **devices_p,
                                     unsigned *num_devices_p)
-@@ -599,9 +663,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -893,9 +974,9 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
  
      dir = opendir(UCT_TCP_IFACE_NETDEV_DIR);
      if (dir == NULL) {
 -        ucs_error("opendir(%s) failed: %m", UCT_TCP_IFACE_NETDEV_DIR);
 -        status = UCS_ERR_IO_ERROR;
 -        goto out;
-+	/* When /sys is unavailable, as can be the case in a container,
-+	 * resort to a good old 'ioctl'.  */
-+	return query_devices_ioctl(md, devices_p, num_devices_p);
++        /* When /sys is unavailable, as can be the case in a container,
++         * resort to a good old 'ioctl'.  */
++        return uct_tcp_query_devices_ioctl(md, devices_p, num_devices_p);
      }
  
      devices     = NULL;
-@@ -655,7 +719,6 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
+@@ -963,7 +1044,6 @@ ucs_status_t uct_tcp_query_devices(uct_md_h md,
  
  out_closedir:
      closedir(dir);
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 4063797a30..949cd11929 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -22,6 +22,7 @@
 ;;; Copyright © 2022 Eric Bavier <bavier@posteo.net>
 ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
 ;;; Copyright © 2022 jgart <jgart@dismail.de>
+;;; Copyright © 2023 Troy Figiel <troy@troyfigiel.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -349,6 +350,38 @@ implements several methods for sequential model-based optimization.
 @code{skopt} aims to be accessible and easy to use in many contexts.")
     (license license:bsd-3)))
 
+(define-public python-tdda
+  (package
+    (name "python-tdda")
+    (version "2.0.9")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "tdda" version))
+       (sha256
+        (base32 "1xs91s8b7cshjcqw88qsrjh10xly799k5rf2ycawqfz2mw8sy3br"))))
+    (build-system pyproject-build-system)
+    (arguments
+     '(#:phases (modify-phases %standard-phases
+                  (add-after 'unpack 'relax-requirements
+                    (lambda _
+                      (substitute* "setup.py"
+                        (("pandas>=1.5.2")
+                         "pandas"))))
+                  (replace 'check
+                    (lambda* (#:key tests? #:allow-other-keys)
+                      (when tests?
+                        (invoke "tdda" "test")))))))
+    (native-inputs (list python-numpy python-pandas))
+    (home-page "https://www.stochasticsolutions.com")
+    (synopsis "Test-driven data analysis library for Python")
+    (description
+     "The TDDA Python module provides command-line and Python API support
+for the overall process of data analysis, through tools that peform
+reference testing, constraint discovery for data, automatic inference
+of regular expressions from text data and automatic test generation.")
+    (license license:expat))) ; MIT License
+
 (define-public python-trimesh
   (package
     (name "python-trimesh")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 8d5af5bd46..9d8f3c156f 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -5204,54 +5204,29 @@ with oauthlib.")
 (define-public whoogle-search
   (package
     (name "whoogle-search")
-    (version "0.8.2")
+    (version "0.8.3")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "whoogle-search" version))
               (sha256
                (base32
-                "1r6ymainwc3b8aar90b74mpnx3rsfscgzh0llwvsb03fbhiypw5g"))))
+                "09b9k97jflajvrs0npyz994rj8xkk400s98jw63b6vpsgw9q9nk4"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       ;; The tests need network access
       #:tests? #f))
     (propagated-inputs
-     (list python-attrs
-           python-beautifulsoup4
-           python-cachelib
-           python-certifi
-           python-cffi
+     (list python-beautifulsoup4
            python-brotli
-           python-chardet
-           python-click
            python-cryptography
            python-cssutils
            python-defusedxml
            python-flask
-           python-flask-session
-           python-idna
-           python-itsdangerous
-           python-jinja2
-           python-markupsafe
-           python-more-itertools
-           python-packaging
-           python-pluggy
-           python-py
-           python-pycodestyle
-           python-pycparser
-           python-pyopenssl
-           python-pyparsing
-           python-pysocks
-           python-dateutil
+           python-dotenv
            python-requests
-           python-soupsieve
            python-stem
-           python-urllib3
-           python-waitress
-           python-wcwidth
-           python-werkzeug
-           python-dotenv))
+           python-waitress))
     (home-page "https://github.com/benbusby/whoogle-search")
     (synopsis "Self-hosted, ad-free, privacy-respecting metasearch engine")
     (description
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index e521c1580d..6a6f69e6bb 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5045,13 +5045,13 @@ to Roman Numerals.")
 (define-public python-rollbar
   (package
     (name "python-rollbar")
-    (version "0.16.3")
+    (version "1.0.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "rollbar" version))
               (sha256
                (base32
-                "1qpd0j50wqli3867xmhwk65pm1cxjs60yg83mcvcf3kic3y3sc82"))))
+                "1bzkgp4r79d789q15vnjji2gcb34bnksx9l7q9pjkw12kzjbfiv3"))))
     (build-system python-build-system)
     (native-inputs (list python-pytest-runner python-unittest2))
     (inputs (list python-requests python-six python-httpx python-blinker
@@ -32573,13 +32573,13 @@ collection.")
 (define-public python-types-pytz
   (package
     (name "python-types-pytz")
-    (version "2021.3.6")
+    (version "2023.3.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "types-pytz" version))
        (sha256
-        (base32 "14yr5hg2ww8s4a0mz2bkd549fv8qgm538fnzxvqv92ld1pcpym3l"))))
+        (base32 "16mbinqac2fjjh4gqw2940q8ysjqwj0hrvj4p9mqz76l5hcx08yc"))))
     (build-system python-build-system)
     (home-page "https://github.com/python/typeshed")
     (synopsis "Typing stubs for pytz")
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index d15732c839..95cc948d9f 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -672,14 +672,14 @@ also flexible enough to handle most nonstandard requirements.")
 (define-public r-matrix
   (package
     (name "r-matrix")
-    (version "1.6-1.1")
+    (version "1.6-3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "Matrix" version))
        (sha256
         (base32
-         "1hlcxr38p4ybb67n25cc1ssh2q2r8cj0flc59lid8hclzvqv27ik"))))
+         "094n9qf5j7bzi4cyxhm276qx2b2qp676ad8w9gql0qhzhfc889li"))))
     (properties `((upstream-name . "Matrix")))
     (build-system r-build-system)
     (propagated-inputs
@@ -1178,14 +1178,14 @@ solution for sending email, including attachments, from within R.")
 (define-public r-stringi
   (package
     (name "r-stringi")
-    (version "1.7.12")
+    (version "1.8.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "stringi" version))
        (sha256
         (base32
-         "02g0464sbprrbjlacx727p9ad1s5nbxl2mnvfmm9h7q000lsrs7g"))))
+         "0jm2f5wh231dzs46g7ic2k4633x9v9bd2a03dlpmq5rr46j299ay"))))
     (build-system r-build-system)
     (inputs (list icu4c))
     (native-inputs (list pkg-config))
@@ -1204,13 +1204,13 @@ transliteration, concatenation, date-time formatting and parsing, etc.")
 (define-public r-stringr
   (package
     (name "r-stringr")
-    (version "1.5.0")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "stringr" version))
        (sha256
-        (base32 "0fk34ql5ak57f06l10ai300kxay6r7kkkyfanh8r24qaf3bmkcaj"))))
+        (base32 "1pj5xwg8kq2jllmszgkw96qj37wlb0x0vx4f3m5j211zpd8yrbd4"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-cli r-glue r-lifecycle r-magrittr r-rlang r-stringi r-vctrs))
@@ -1448,13 +1448,13 @@ for template use among CRAN packages.")
 (define-public r-evaluate
   (package
     (name "r-evaluate")
-    (version "0.22")
+    (version "0.23")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "evaluate" version))
               (sha256
                (base32
-                "0sz4zimz4brbd9sawdazfgipkmfzzdmdq01b5m8pnrql5xrxhiwh"))))
+                "0p540jl6sixpgk08cp2h9470d28p7n66pfafiskvz3rba0vrrky9"))))
     (build-system r-build-system)
     (home-page "https://github.com/hadley/evaluate")
     (synopsis "Parsing and evaluation tools for R")
@@ -1782,13 +1782,13 @@ defined in different packages.")
 (define-public r-rlang
   (package
     (name "r-rlang")
-    (version "1.1.1")
+    (version "1.1.2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "rlang" version))
               (sha256
                (base32
-                "16fsibxbh4fy62x6fw358qbniw085qs1wjyr75n22xv9g6kwjpjy"))))
+                "14l0dz36wav2jbz0dd3w34va68lrhr7fgd9dqf1v4nawdvff23ia"))))
     (build-system r-build-system)
     (home-page "http://rlang.tidyverse.org")
     (synopsis "Functions for base types, core R and Tidyverse features")
@@ -3063,13 +3063,13 @@ disk (or a connection).")
 (define-public r-plotrix
   (package
     (name "r-plotrix")
-    (version "3.8-2")
+    (version "3.8-4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "plotrix" version))
               (sha256
                (base32
-                "07xwq3505qb2yak7pfda22yqwifj6m78f8b5rm0ym74808qrawmv"))))
+                "1mp8mb79prgf5fzlaix4fvslr4q67hrzxqdv3kr7mik1mf9jv8p6"))))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/plotrix")
     (synopsis "Various plotting functions")
@@ -3126,13 +3126,13 @@ well as additional utilities such as panel and axis annotation functions.")
 (define-public r-rcpparmadillo
   (package
     (name "r-rcpparmadillo")
-    (version "0.12.6.4.0")
+    (version "0.12.6.6.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RcppArmadillo" version))
               (sha256
                (base32
-                "1k7xq2yl4pkc7krz1bcdnx5kfj6n4zjmnm40nly2da2ji87agv49"))))
+                "171yflg07xi6570ich5gxhzsqqs7k3rxyhwg96amlkm1qn8v2pnk"))))
     (properties `((upstream-name . "RcppArmadillo")))
     (build-system r-build-system)
     (propagated-inputs
@@ -3195,14 +3195,14 @@ encoder/decoder, round-off-error-free sum and cumsum, etc.")
 (define-public r-rprojroot
   (package
     (name "r-rprojroot")
-    (version "2.0.3")
+    (version "2.0.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rprojroot" version))
        (sha256
         (base32
-         "15zq606s544wmbvk5dw13xq0sspr9dsxyxlvzvn0r48f8x3l4q2h"))))
+         "16bf6ga5fgm83j3m67plw5i54az2vdbvw5m99ixaqkd24pxn7x5m"))))
     (build-system r-build-system)
     (native-inputs
      (list r-knitr))
@@ -3340,13 +3340,13 @@ a column in data frame.")
 (define-public r-rsqlite
   (package
     (name "r-rsqlite")
-    (version "2.3.2")
+    (version "2.3.3")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RSQLite" version))
               (sha256
                (base32
-                "09vbx3akqws8a07ai6qbp3jn1w05qsmazl79wl2dyvvjpzs8b62x"))))
+                "0i1cjhqcclglv62j4dclxraaj5jmqdwyj4bs3qfbd8jd8v5d1c9j"))))
     (properties `((upstream-name . "RSQLite")))
     (build-system r-build-system)
     (propagated-inputs
@@ -3370,13 +3370,13 @@ engine (version 3.8.8.2) is included.")
 (define-public r-rcurl
   (package
     (name "r-rcurl")
-    (version "1.98-1.12")
+    (version "1.98-1.13")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RCurl" version))
               (sha256
                (base32
-                "1ci6lsxm0f13yzw712gcbq23syl54x5llvhs2w1b8wwm9vqgx0qs"))))
+                "01pkmip1sllislmp34c25i9m9mlrid9b48xfjbf93sml55ijz985"))))
     (properties `((upstream-name . "RCurl")))
     (build-system r-build-system)
     (arguments
@@ -3412,13 +3412,13 @@ ldap, and also supports cookies, redirects, authentication, etc.")
 (define-public r-xml
   (package
     (name "r-xml")
-    (version "3.99-0.14")
+    (version "3.99-0.15")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "XML" version))
               (sha256
                (base32
-                "1ygi65ddgbsamxw2rm0p2clfak1xj44xyisgk48y72cd9ldaddic"))))
+                "0giv03bixc4kcq4dmcwzra7gp01i41hfr1710fd1v2hacya4d8cq"))))
     (properties
      `((upstream-name . "XML")))
     (build-system r-build-system)
@@ -4543,13 +4543,13 @@ t-probabilities, quantiles, random deviates and densities.")
 (define-public r-matrixstats
   (package
     (name "r-matrixstats")
-    (version "1.0.0")
+    (version "1.1.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "matrixStats" version))
               (sha256
                (base32
-                "0vxd7g1fm4x0f72bs1xfik1d4yklvpjdyg1hpx86pl8fwr86i1wl"))))
+                "0h85hjvsmc8s3hyjdj83fykb2vl8jc7pb9ynp2xsl0q9v1sihrxl"))))
     (properties `((upstream-name . "matrixStats")))
     (build-system r-build-system)
     (arguments
@@ -6014,18 +6014,18 @@ based on an interface to Fortran implementations by M. J. D. Powell.")
 (define-public r-rcppeigen
   (package
     (name "r-rcppeigen")
-    (version "0.3.3.9.3")
+    (version "0.3.3.9.4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "RcppEigen" version))
        (sha256
         (base32
-         "0xhwgn77166ir7qnzl25mj0byskkqr0b36hihrpr2zaqsrzs8wsq"))))
+         "1faz1phvg7g14bchi88vizn5mfhgiwmsjg7jzkyf1yjg0f6vpsj1"))))
     (properties `((upstream-name . "RcppEigen")))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-rcpp r-matrix))
+     (list r-rcpp))
     (home-page "http://eigen.tuxfamily.org")
     (synopsis "Rcpp integration for the Eigen templated linear algebra library")
     (description
@@ -6060,14 +6060,14 @@ metrics for evaluating models.")
 (define-public r-matrixmodels
   (package
     (name "r-matrixmodels")
-    (version "0.5-2")
+    (version "0.5-3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "MatrixModels" version))
        (sha256
         (base32
-         "0ap3mfzb2psjwlksfjzs2ycl5598bllwzx5hfmf9db4yjsydn1hw"))))
+         "03zjfxjk4l2dl1117slz163w0ky675d23sjfni4d7fdhqq359ny2"))))
     (properties `((upstream-name . "MatrixModels")))
     (build-system r-build-system)
     (propagated-inputs
@@ -6142,14 +6142,14 @@ algorithms.")
 (define-public r-lme4
   (package
     (name "r-lme4")
-    (version "1.1-34")
+    (version "1.1-35.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lme4" version))
        (sha256
         (base32
-         "1bbaxkrd5m3d40y6jdyrdr4vsjyzkfixbqjwj6c8inmks98f2wp8"))))
+         "0nzv1a22pfsf2ryw91h16ic4cb8y8g6wh0gx3msr7gv8dwwi3974"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-boot
@@ -6395,14 +6395,14 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).")
 (define-public r-ranger
   (package
     (name "r-ranger")
-    (version "0.15.1")
+    (version "0.16.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ranger" version))
        (sha256
         (base32
-         "0bibv9xf6w8k8nsc13f2yd4kx99aq0i758h3wfh089szgkpdjrad"))))
+         "12c52gqqwaaid5b062gad18ir1vala1z3a0z5j4af1xqzlxgk583"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-rcpp r-matrix r-rcppeigen))
diff --git a/gnu/packages/tbb.scm b/gnu/packages/tbb.scm
index b2d276ac8b..ec630a029f 100644
--- a/gnu/packages/tbb.scm
+++ b/gnu/packages/tbb.scm
@@ -49,10 +49,33 @@
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags
-       '(,@(if (target-riscv64?)
+       '(,@(if (or (target-riscv64?)
+                   (target-ppc32?))
             '("-DTBB_TEST_LINK_FLAGS=-latomic")
             `())
-         "-DTBB_STRICT=OFF"))) ;; Don't fail on warnings
+         ,@(if (or (target-arm32?)
+                   (target-ppc32?))
+             '("-DTBB_TEST_COMPILE_FLAGS=-DTBB_TEST_LOW_WORKLOAD")
+             `())
+         "-DTBB_STRICT=OFF")   ;; Don't fail on warnings
+       #:phases
+       (modify-phases %standard-phases
+         ,@(cond
+             ((target-arm32?)
+              `((add-after 'unpack 'adjust-test-suite
+                  (lambda _
+                    (substitute* "test/CMakeLists.txt"
+                      ;; Bus error, skipped on mips.
+                      ((".*test_malloc_pools.*") ""))))))
+             ((target-ppc32?)
+              `((add-after 'unpack 'adjust-test-suite
+                  (lambda _
+                      (substitute* "test/CMakeLists.txt"
+                        ;; These tests hang forever.
+                        ((".*test_function_node.*") "")
+                        ((".*test_multifunction_node.*") "")
+                        ((".*test_async_node.*") ""))))))
+             (else '())))))
     (home-page "https://www.threadingbuildingblocks.org")
     (synopsis "C++ library for parallel programming")
     (description
diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm
index 71f32b3f43..d4bf27a790 100644
--- a/gnu/packages/tor.scm
+++ b/gnu/packages/tor.scm
@@ -63,14 +63,14 @@
 (define-public tor
   (package
     (name "tor")
-    (version "0.4.8.8")
+    (version "0.4.8.9")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://dist.torproject.org/tor-"
                                  version ".tar.gz"))
              (sha256
               (base32
-               "0140d0zcjxi4vijvr2gk3kmnd4xa80sjj9kdcc2gzazyr84fkfr1"))))
+               "0rfgn88izn74nh6gy42ggwmiicnylp73skrlwm61n4znj247vfsr"))))
     (build-system gnu-build-system)
     (arguments
      (list #:configure-flags
diff --git a/gnu/packages/web-browsers.scm b/gnu/packages/web-browsers.scm
index e60661e493..553d003631 100644
--- a/gnu/packages/web-browsers.scm
+++ b/gnu/packages/web-browsers.scm
@@ -95,6 +95,7 @@
   #:use-module (gnu packages qt)
   #:use-module (gnu packages sdl)
   #:use-module (gnu packages sqlite)
+  #:use-module (gnu packages tcl)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages webkit)
   #:use-module (gnu packages xorg))
@@ -586,7 +587,7 @@ driven and does not detract you from your daily work.")
 (define-public nyxt
   (package
     (name "nyxt")
-    (version "3.9.1")
+    (version "3.9.2")
     (source
      (origin
        (method git-fetch)
@@ -595,7 +596,7 @@ driven and does not detract you from your daily work.")
              (commit version)))
        (sha256
         (base32
-         "1x7ia43yh024hwwsh2a6g2daznkzgjlisnxvjfcb9sgvfqfa368i"))
+         "1v85jn46d9vacjig6n9z797fch88fw6vzwbfdzlqdkm86vvm8dwn"))
        (file-name (git-file-name "nyxt" version))
        (modules '((guix build utils)))
        (snippet
@@ -852,16 +853,16 @@ http, and https via third-party applications.")
 (define-public tinmop
   (package
     (name "tinmop")
-    (version "0.9.9.141")
+    (version "0.9.9.1414213")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-             (url "https://notabug.org/cage/tinmop")
+             (url "https://codeberg.org/cage/tinmop")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0hx52kaq0q9iccalkxk50q1v3mf9ypardjgv56d5sdrbhfqyashl"))))
+        (base32 "0rlgnqld6ls46452xvcr8k4ji4lwmlsrxib5ii9l9clkm0s477wv"))))
     (build-system gnu-build-system)
     (native-inputs
      (list autoconf
@@ -872,6 +873,7 @@ http, and https via third-party applications.")
            nano
            openssl
            sbcl
+           tk
            unzip
            xdg-utils))
     (inputs
@@ -893,10 +895,12 @@ http, and https via third-party applications.")
            sbcl-crypto-shortcuts
            sbcl-drakma
            sbcl-esrap
+           sbcl-flexi-streams
            sbcl-ieee-floats
            sbcl-local-time
            sbcl-log4cl
            sbcl-marshal
+           sbcl-nodgui
            sbcl-osicat
            sbcl-parse-number
            sbcl-percent-encoding
@@ -907,6 +911,7 @@ http, and https via third-party applications.")
            sbcl-trivial-clipboard
            sbcl-unix-opts
            sbcl-usocket
+           sbcl-yason
            sqlite))
     (arguments
      `(#:tests? #f
@@ -937,10 +942,10 @@ http, and https via third-party applications.")
                    "--eval \"(push \\\"$$(pwd)/\\\" asdf:*central-registry*)\"  "))))
              #t)))))
     (synopsis
-     "Gemini, gopher, kami and pleroma client with a terminal interface")
+     "Gemini, gopher, kami and mastodon/pleroma client with a terminal interface")
     (description
-     "This package provides a Gemini, gopher, kami and pleroma client with a
-terminal interface.")
+     "This package provides a Gemini, gopher, kami and mastodon/pleroma client
+with a terminal interface, for Gemini also a GUI is available.")
     (home-page "https://www.autistici.org/interzona/tinmop.html")
     (license license:gpl3+)))
 
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 7363925aac..f06f0d6abf 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -64,6 +64,7 @@
 ;;; Copyright © 2023 David Thompson <dthompson2@worcester.edu>
 ;;; Copyright © 2023 Christopher Howard <christopher@librehacker.com>
 ;;; Copyright © 2023 Felix Lechner <felix.lechner@lease-up.com>
+;;; Copyright © 2023 Evgeny Pisemsky <evgeny@pisemsky.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -7910,6 +7911,35 @@ features include:
 @end enumerate\n")
     (license license:expat)))
 
+(define-public monsterid
+  (let ((commit "5597f177b473343ff5cad9a6e0e5b255312c6096")
+        (revision "0"))
+    (package
+      (name "monsterid")
+      (version (git-version "0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/splitbrain/monsterID")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0ixyrrcbw96plcdna2rx1pqwisqy9hnr57kvamgj13lzlv2whdb3"))))
+      (build-system copy-build-system)
+      (arguments
+       '(#:install-plan '(("monsterid.php" "share/web/monsterid/")
+                          ("parts/" "share/web/monsterid/parts/"
+                           #:include-regexp ("\\.png$")))))
+      (home-page "https://www.splitbrain.org/projects/monsterid")
+      (synopsis "The original MonsterID implementation")
+      (description
+       "MonsterID is a method to generate a unique monster image based upon a
+certain identifier (IP address, email address, whatever).  It can be
+used to automatically provide personal avatar images in blog comments
+or other community services.")
+      (license license:expat))))
+
 (define-public cat-avatar-generator
   (let ((commit "9360ea33f79d1dad3e43494b09878b5e3f6b41fa")
         (revision "1"))
diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm
index 9de5cd24d2..f9bf42b721 100644
--- a/gnu/packages/xdisorg.scm
+++ b/gnu/packages/xdisorg.scm
@@ -2796,9 +2796,16 @@ Wayland and @code{wlroots} by leveraging @command{grim} and @command{slurp}.")
            #~(list (string-append "-Dzshcompletiondir=" #$output
                                   "/share/zsh/site-functions")
                    (string-append "-Dfishcompletiondir=" #$output
-                                  "/share/fish/completions"))
+                                  "/share/fish/vendor_completions.d"))
            #:phases
            #~(modify-phases %standard-phases
+               (add-after 'unpack 'fix-bash-completion-dir
+                 (lambda _
+                   (substitute* "completions/bash/meson.build"
+                     (("bash_completion_dir =.*")
+                      (string-append "bash_completion_dir = "
+                                     "join_paths(get_option('sysconfdir'), "
+                                     "'bash_completion.d')\n")))))
                (add-after 'unpack 'patch-file-names
                  (lambda* (#:key inputs #:allow-other-keys)
                    (substitute* (find-files "src" "\\.c$")
diff --git a/guix/build-system/clojure.scm b/guix/build-system/clojure.scm
index fb897356bc..037fcaf21d 100644
--- a/guix/build-system/clojure.scm
+++ b/guix/build-system/clojure.scm
@@ -83,8 +83,8 @@
                             #:clojure #:jdk #:zip)))
 
     (if target
-        (error "No cross-compilation for clojure-build-system yet: LOWER"
-               target) ; FIXME
+        #f                              ; FIXME: No cross-compilation for
+                                        ; clojure-build-system yet
         (bag (name name)
              (system system)
              (host-inputs `(,@(if source
diff --git a/guix/build/guile-build-system.scm b/guix/build/guile-build-system.scm
index 32a431d347..e7e7f2d0be 100644
--- a/guix/build/guile-build-system.scm
+++ b/guix/build/guile-build-system.scm
@@ -28,6 +28,7 @@
   #:use-module (ice-9 format)
   #:use-module (guix build utils)
   #:export (target-guile-effective-version
+            target-guile-scm+go
             %standard-phases
             guile-build))
 
@@ -44,7 +45,17 @@ Return #false if it cannot be determined."
          (string? line)
          line)))
 
-(define (file-sans-extension file)                ;TODO: factorize
+(define* (target-guile-scm+go output #:optional guile)
+  "Return paths under `output' for scm and go files for effective version of
+GUILE or whichever `guile' is in $PATH.  Raises an error if they cannot be
+determined."
+  (let* ((version (or (target-guile-effective-version guile)
+                      (error "Cannot determine the effective target guile version.")))
+         (scm (string-append output "/share/guile/site/" version))
+         (go (string-append output "/lib/guile/" version "/site-ccache")))
+    (values scm go)))
+
+(define (file-sans-extension file)      ;TODO: factorize
   "Return the substring of FILE without its extension, if any."
   (let ((dot (string-rindex file #\.)))
     (if dot
diff --git a/guix/scripts/locate.scm b/guix/scripts/locate.scm
index ae64f46896..92af3509bf 100644
--- a/guix/scripts/locate.scm
+++ b/guix/scripts/locate.scm
@@ -657,7 +657,7 @@ Locate FILE and return the list of packages that contain it.\n"))
                                  files)))
             (()
              (if (null? files)
-                 (unless update?
+                 (unless (or update? (assoc-ref opts 'clear?))
                    (leave (G_ "no files to search for~%")))
                  (leave (N_ "file~{ '~a'~} not found in database '~a'~%"
                             "files~{ '~a'~} not found in database '~a'~%"
diff --git a/tests/guix-locate.sh b/tests/guix-locate.sh
index 43f8ba53b0..de0ea5769d 100755
--- a/tests/guix-locate.sh
+++ b/tests/guix-locate.sh
@@ -70,3 +70,9 @@ then
     $cmd_store guile | grep "$(guix build guile-bootstrap)/bin/guile"
     $cmd_store boot-9.scm | grep ^guile-bootstrap
 fi
+
+# The command below is an error: "no files to search for"...
+guix locate && false
+
+# ... but this one is fine.
+guix locate --clear
author	John Kehayias <john.kehayias@protonmail.com>	2023-11-21 18:11:10 -0500
committer	John Kehayias <john.kehayias@protonmail.com>	2023-11-21 18:11:30 -0500
commit	8d2a5a36af4c36dfa08c7ee75d7a06ebb7a8225a (patch)
tree	0e0f0cc9d5fa5a3c783451d12b10ebdb4c0aafe9
parent	d1b786fe629ae9a80f37f64fdf48b9d7c132cd11 (diff)
parent	42be8fa560a7554ac35801b46c3a0a007fd742ce (diff)