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authorzimoun <zimon.toutoune@gmail.com>2022-01-18 18:54:11 +0100
committerRicardo Wurmus <rekado@elephly.net>2022-01-21 15:53:17 +0100
commita81e20b18a4503c1b4a771e5543845b6ddb932d5 (patch)
tree62ef7b48ea2c583a198b4805f8957ffd36bf0d53
parent40042cca73b244a5db39df468d5b4b190168f4e8 (diff)
gnu: Add r-jetset.
* gnu/packages/bioconductor.scm (r-jetset): New variable.
-rw-r--r--gnu/packages/bioconductor.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 682e85f901..5ab51a74fa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1964,6 +1964,33 @@ closely reconstructs the mutational profile.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages.
+(define-public r-jetset
+ (package
+ (name "r-jetset")
+ (version "3.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "jetset" version))
+ (sha256
+ (base32 "0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"))))
+ (properties `((upstream-name . "jetset")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-annotationdbi r-org-hs-eg-db))
+ (home-page "http://www.cbs.dtu.dk/biotools/jetset/")
+ (synopsis "One-to-one gene-probeset mapping for Affymetrix human microarrays")
+ (description
+ "This package provides a one-to-one mapping from gene to \"best\" probe
+set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a,
+hgu133plus2, and u133x3p. On Affymetrix gene expression microarrays, a single
+gene may be measured by multiple probe sets. This can present a mild
+conundrum when attempting to evaluate a gene \"signature\" that is defined by
+gene names rather than by specific probe sets. This package also includes the
+pre-calculated probe set quality scores that were used to define the
+mapping.")
+ (license license:artistic2.0)))
+
+;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf
(package
(name "r-nmf")