summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2018-09-24 13:23:44 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-09-24 13:31:20 +0200
commit28829c040f92399c0705f968f232543e97e5f5f9 (patch)
treea9945af45b426066eb4930f05e2411a1e216ab9d
parenta434730f2ebc39fcda7a8d0709c7f5adffa69299 (diff)
gnu: Add r-cssam.
* gnu/packages/bioinformatics.scm (r-cssam): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d92fbd7de9..2366843d87 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13793,3 +13793,34 @@ sequencing data.")
common tasks in the analysis of omics data, leveraging and enhancing features
provided by Bioconductor packages.")
(license license:gpl3+))))
+
+(define-public r-cssam
+ (let ((revision "1")
+ (commit "9ec58c982fa551af0d80b1a266890d92954833f2"))
+ (package
+ (name "r-cssam")
+ (version (git-version "1.4" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/shenorrLab/csSAM.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "128syf9v39gk0z3ip000qpsjbg6l1siyq6c8b0hz41dzg5achyb3"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-formula" ,r-formula)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-pkgmaker" ,r-pkgmaker)
+ ("r-plyr" ,r-plyr)
+ ("r-rngtools" ,r-rngtools)
+ ("r-scales" ,r-scales)))
+ (home-page "https://github.com/shenorrLab/csSAM/")
+ (synopsis "Cell type-specific statistical analysis of microarray")
+ (description "This package implements the method csSAM that computes
+cell-specific differential expression from measured cell proportions using
+SAM.")
+ ;; Any version
+ (license license:lgpl2.1+))))