diff options
| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-09-02 15:35:14 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-09-02 16:46:37 +0200 |
| commit | 35aa90a1fd4d8f29d0c88e4a73a7971cb261c68e (patch) | |
| tree | dc1767be0e509be668291dc35773d3ad63146e8a | |
| parent | d058708e86dab50579d3147e3ee2c6fcc03e63c9 (diff) | |
gnu: Add Infernal.
* gnu/packages/bioinformatics.scm (infernal): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 08c25459c0..2d76a81339 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4835,6 +4835,32 @@ data in the form of VCF files.") ;; at https://vcftools.github.io/license.html (license license:lgpl3))) +(define-public infernal + (package + (name "infernal") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (string-append "http://eddylab.org/software/infernal/" + "infernal-" version ".tar.gz")) + (sha256 + (base32 + "0sr2hiz3qxfwqpz3whxr6n82p3x27336v3f34iqznp10hks2935c")))) + (build-system gnu-build-system) + (native-inputs + `(("perl" ,perl))) ; for tests + (home-page "http://eddylab.org/infernal/") + (synopsis "Inference of RNA alignments") + (description "Infernal (\"INFERence of RNA ALignment\") is a tool for +searching DNA sequence databases for RNA structure and sequence similarities. +It is an implementation of a special case of profile stochastic context-free +grammars called @dfn{covariance models} (CMs). A CM is like a sequence +profile, but it scores a combination of sequence consensus and RNA secondary +structure consensus, so in many cases, it is more capable of identifying RNA +homologs that conserve their secondary structure more than their primary +sequence.") + (license license:bsd-3))) + (define-public r-vegan (package (name "r-vegan") |