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authorArun Isaac <arunisaac@systemreboot.net>2021-04-14 22:36:58 +0530
committerArun Isaac <arunisaac@systemreboot.net>2021-04-14 22:39:54 +0530
commit563e4bd884f59f91d946de175f93fd423186843a (patch)
tree6817701acfe1ba5818834d1e404e36e5a17956c6
parent12e210d90744948785b6ac007afae88456adc080 (diff)
gnu: cwltool: Update to 3.0.20210319143721.
* gnu/packages/bioinformatics.scm (cwltool): Update to 3.0.20210319143721. [arguments]: In the loosen-version-restrictions phase, relax pytest version restriction. In the modify-tests phase, delete file tests/test_content_type.py since it contains tests that require network access.
-rw-r--r--gnu/packages/bioinformatics.scm10
1 files changed, 6 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 54641c6906..41ef4cd513 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2644,7 +2644,7 @@ and record oriented data modeling and the Semantic Web.")
(define-public cwltool
(package
(name "cwltool")
- (version "3.0.20201121085451")
+ (version "3.0.20210319143721")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -2653,7 +2653,7 @@ and record oriented data modeling and the Semantic Web.")
(file-name (git-file-name name version))
(sha256
(base32
- "1awf99n7aglxc5zszrlrv6jxp355jp45ws7wpsgjlgcdv7advn0w"))))
+ "1sgs9ckyxb9f9169mc3wm9lnjg4080ai42xqsrwpw9l8apy4c9m5"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -2661,8 +2661,9 @@ and record oriented data modeling and the Semantic Web.")
(add-after 'unpack 'loosen-version-restrictions
(lambda _
(substitute* "setup.py"
- (("== 1.5.1") ">=1.5.1") ; prov
- ((", < 3.5") "")) ; shellescape
+ (("== 1.5.1") ">=1.5.1") ; prov
+ ((", < 3.5") "") ; shellescape
+ ((" >= 6.0.2, < 6.2") "")) ; pytest
#t))
(add-after 'unpack 'dont-use-git
(lambda _
@@ -2674,6 +2675,7 @@ and record oriented data modeling and the Semantic Web.")
(add-after 'unpack 'modify-tests
(lambda _
;; Tries to connect to the internet.
+ (delete-file "tests/test_content_type.py")
(delete-file "tests/test_udocker.py")
(delete-file "tests/test_http_input.py")
(substitute* "tests/test_load_tool.py"