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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-03-27 10:09:10 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-04-01 11:39:39 +0200
commitbfe3c6857251c1fff24317da602b9cd762c1c112 (patch)
tree696aa112d45a141745eccbd126198fcf4458f9d8
parent9495e73689b4d650146523830ee2da164fc50448 (diff)
gnu: Add clustal omega.
* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3725f3ffe5..9813d07e9c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -33,6 +33,7 @@
#:use-module (gnu packages ncurses)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages popt)
#:use-module (gnu packages python)
#:use-module (gnu packages tbb)
#:use-module (gnu packages vim)
@@ -360,6 +361,30 @@ multiple sequence alignments.")
"CLIPper is a tool to define peaks in CLIP-seq datasets.")
(license license:gpl2)))
+(define-public clustal-omega
+ (package
+ (name "clustal-omega")
+ (version "1.2.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://www.clustal.org/omega/clustal-omega-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "02ibkx0m0iwz8nscg998bh41gg251y56cgh86bvyrii5m8kjgwqf"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("argtable" ,argtable)))
+ (home-page "http://www.clustal.org/omega/")
+ (synopsis "Multiple sequence aligner for protein and DNA/RNA")
+ (description
+ "Clustal-Omega is a general purpose multiple sequence alignment (MSA)
+program for protein and DNA/RNA. It produces high quality MSAs and is capable
+of handling data-sets of hundreds of thousands of sequences in reasonable
+time.")
+ (license license:gpl2+)))
+
(define-public crossmap
(package
(name "crossmap")