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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 15:29:17 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:41 +0100
commit04e2a2e9690c54e6805774598f068acc46f25e38 (patch)
tree2042f23cd6a5564951dffd142cf1989807df4671
parent3af149f524122a9f8a4802208777fe26b369f60c (diff)
gnu: Add r-dirichletmultinomial.
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cd28798a03..18ed2a5f2d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9546,6 +9546,35 @@ provides a highly flexible way to arrange multiple heatmaps and supports
self-defined annotation graphics.")
(license license:gpl2+)))
+(define-public r-dirichletmultinomial
+ (package
+ (name "r-dirichletmultinomial")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DirichletMultinomial" version))
+ (sha256
+ (base32
+ "1c4s6x0qm20556grcd1xys9kkpnlzpasaai474malwcg6qvgi4x1"))))
+ (properties
+ `((upstream-name . "DirichletMultinomial")))
+ (build-system r-build-system)
+ (inputs
+ `(("gsl" ,gsl)))
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/DirichletMultinomial")
+ (synopsis "Dirichlet-Multinomial mixture models for microbiome data")
+ (description
+ "Dirichlet-multinomial mixture models can be used to describe variability
+in microbial metagenomic data. This package is an interface to code
+originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2):
+1-15.")
+ (license license:lgpl3)))
+
(define-public r-qvalue
(package
(name "r-qvalue")