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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 17:26:00 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:45 +0100
commit30eb4e37c8b24c3e8ecdc1147035d1735816fa94 (patch)
treeeec9c1a2b69c51b26483625d6d601ea32646edbe
parentfbf5440637145a9203219ceecb44e3207f789284 (diff)
gnu: Add r-fithic.
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f53b17b403..60772b576a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10142,6 +10142,30 @@ EMBL-EBI GWAS catalog.")
visualizations for publication-quality multi-panel figures.")
(license license:gpl2+)))
+(define-public r-fithic
+ (package
+ (name "r-fithic")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "FitHiC" version))
+ (sha256
+ (base32
+ "12ylhrppi051m7nqsgq95kzd9g9wmp34i0zzfi55cjqawlpx7c6n"))))
+ (properties `((upstream-name . "FitHiC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-fdrtool" ,r-fdrtool)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://bioconductor.org/packages/FitHiC")
+ (synopsis "Confidence estimation for intra-chromosomal contact maps")
+ (description
+ "Fit-Hi-C is a tool for assigning statistical confidence estimates to
+intra-chromosomal contact maps produced by genome-wide genome architecture
+assays such as Hi-C.")
+ (license license:gpl2+)))
+
(define-public r-qvalue
(package
(name "r-qvalue")