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authorRicardo Wurmus <rekado@elephly.net>2017-11-07 16:16:29 +0100
committerRicardo Wurmus <rekado@elephly.net>2017-11-07 23:32:44 +0100
commit7fd5f60b8f1930bc4828ccb76b8f0a7a53527c33 (patch)
tree6c60f6f37e51017dea758bd9369f9fc9febdb669
parent10e16fa93d09d72302a2c27d94b2975aa8f86174 (diff)
gnu: Add r-hardyweinberg.
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
-rw-r--r--gnu/packages/cran.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 97efca3602..41eb559ac1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1349,3 +1349,34 @@ Various diagnostic plots are available to inspect the quality of the
imputations.")
;; Any of these two versions.
(license (list license:gpl2 license:gpl3))))
+
+(define-public r-hardyweinberg
+ (package
+ (name "r-hardyweinberg")
+ (version "1.5.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "HardyWeinberg" version))
+ (sha256
+ (base32
+ "0xbcchmzii0jv0ygr91n72r39j1axraxd2i607b56v4yd5d8sy4k"))))
+ (properties `((upstream-name . "HardyWeinberg")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mice" ,r-mice)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://cran.r-project.org/package=HardyWeinberg")
+ (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
+ (description
+ "This package contains tools for exploring Hardy-Weinberg equilibrium for
+diallelic genetic marker data. All classical tests (chi-square, exact,
+likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
+included in the package, as well as functions for power computation and for
+the simulation of marker data under equilibrium and disequilibrium. Routines
+for dealing with markers on the X-chromosome are included. Functions for
+testing equilibrium in the presence of missing data by using multiple
+imputation are also provided. Implements several graphics for exploring the
+equilibrium status of a large set of diallelic markers: ternary plots with
+acceptance regions, log-ratio plots and Q-Q plots.")
+ (license license:gpl2+)))