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authorHong Li <hli@mdc-berlin.de>2021-03-22 14:21:47 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-22 14:27:13 +0100
commit0ff888108a6afce6965a445960087ab6b1c79f2a (patch)
tree722635c66ce39e826c8cca5acb77e43dbaa2d7f9
parent1f958631efd01f7f2ee475117d5ed13a91daae9c (diff)
gnu: Add r-chromstar.
* gnu/packages/bioconductor.scm (r-chromstar): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
-rw-r--r--gnu/packages/bioconductor.scm38
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2b22c510ea..0bcd9a67cd 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10643,6 +10643,44 @@ large-scale and fully automated analysis.")
the earlier snpMatrix package, allowing for uncertainty in genotypes.")
(license license:gpl3)))
+(define-public r-chromstar
+ (package
+ (name "r-chromstar")
+ (version "1.16.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "chromstaR" version))
+ (sha256
+ (base32
+ "0vgpb7g2cncdn82hia2yzzachyns2zbd7906662g990qjnp2xlm1"))))
+ (properties `((upstream-name . "chromstaR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bamsignals" ,r-bamsignals)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-chromstardata" ,r-chromstardata)
+ ("r-doparallel" ,r-doparallel)
+ ("r-foreach" ,r-foreach)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-iranges" ,r-iranges)
+ ("r-mvtnorm" ,r-mvtnorm)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/ataudt/chromstaR")
+ (synopsis "Chromatin state analysis for ChIP-Seq data")
+ (description
+ "This package implements functions for combinatorial and differential
+analysis of ChIP-seq data. It includes uni- and multivariate peak-calling,
+export to genome browser viewable files, and functi ons for enrichment
+analyses.")
+ (license license:artistic2.0)))
+
(define-public r-sushi
(package
(name "r-sushi")