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authorRicardo Wurmus <rekado@elephly.net>2019-06-11 13:39:38 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-06-11 13:39:50 +0200
commit944cb87a33e222cacae6647f37325b94e6a47568 (patch)
tree6ac259ee6acd11795096d1cfaece15048e36ae30
parentbf3005346e6538aba6d077c887f688779b94b274 (diff)
gnu: Add r-psiplot.
* gnu/packages/bioinformatics.scm (r-psiplot): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bb15672d51..089804eaa9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14755,3 +14755,34 @@ ATAC-seq results. It was written to make it easier to spot differences that
might be caused by ATAC-seq library prep or sequencing. The main program,
@code{ataqv}, examines aligned reads and reports some basic metrics.")
(license license:gpl3+)))
+
+(define-public r-psiplot
+ (package
+ (name "r-psiplot")
+ (version "2.3.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/kcha/psiplot.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "08438h16cfry5kqh3y9hs8q1b1a8bxhblsm75knviz5r6q0n1jxh"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)
+ ("r-dplyr" ,r-dplyr)
+ ("r-tidyr" ,r-tidyr)
+ ("r-purrr" ,r-purrr)
+ ("r-readr" ,r-readr)
+ ("r-magrittr" ,r-magrittr)
+ ("r-ggplot2" ,r-ggplot2)))
+ (home-page "https://github.com/kcha/psiplot")
+ (synopsis "Plot percent spliced-in values of alternatively-spliced exons")
+ (description
+ "PSIplot is an R package for generating plots of @dfn{percent
+spliced-in} (PSI) values of alternatively-spliced exons that were computed by
+vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
+are generated using @code{ggplot2}.")
+ (license license:expat)))