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authorThomas Danckaert <post@thomasdanckaert.be>2017-08-24 11:00:59 +0200
committerThomas Danckaert <thomas.danckaert@gmail.com>2017-09-01 08:34:24 +0200
commite3a1a1deda03e52fbdb38e9c7a92ce69f78c8eb3 (patch)
tree441fe23102d055656ce5b77e32372ef0cdab2a2f
parenta0596a2f27c339bcb4c5d3f2ffc8d6df38ff7947 (diff)
gnu: hdf5: Add output for fortran interface.
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran. [outputs]: Add "fortran". [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran output to the runpath of the Fortran libs; add a 'split phase to move all Fortran-related files to the the Fortran output store location.
-rw-r--r--gnu/packages/maths.scm53
1 files changed, 50 insertions, 3 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 7481636faa..b56153199b 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -648,16 +648,30 @@ incompatible with HDF5.")
(build-system gnu-build-system)
(inputs
`(("zlib" ,zlib)))
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (outputs '("out" ; core library
+ "fortran")) ; fortran interface
(arguments
`(;; Some of the users, notably Flann, need the C++ interface.
- #:configure-flags '("--enable-cxx")
+ #:configure-flags '("--enable-cxx"
+ "--enable-fortran"
+ "--enable-fortran2003")
#:phases
(modify-phases %standard-phases
(add-before 'configure 'patch-configure
- (lambda _
+ (lambda* (#:key outputs #:allow-other-keys)
(substitute* "configure"
(("/bin/mv") "mv"))
+ (substitute* "fortran/src/Makefile.in"
+ (("libhdf5_fortran_la_LDFLAGS =")
+ (string-append "libhdf5_fortran_la_LDFLAGS = -Wl-rpath="
+ (assoc-ref outputs "fortran") "/lib")))
+ (substitute* "hl/fortran/src/Makefile.in"
+ (("libhdf5hl_fortran_la_LDFLAGS =")
+ (string-append "libhdf5hl_fortran_la_LDFLAGS = -Wl,-rpath="
+ (assoc-ref outputs "fortran") "/lib")))
#t))
(add-after 'install 'patch-references
(lambda* (#:key inputs outputs #:allow-other-keys)
@@ -666,7 +680,40 @@ incompatible with HDF5.")
(substitute* (find-files bin "h5p?cc")
(("-lz" lib)
(string-append "-L" zlib "/lib " lib)))
- #t))))))
+ #t)))
+ (add-after 'install 'split
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ ;; Move all fortran-related files
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin"))
+ (lib (string-append out "/lib"))
+ (inc (string-append out "/include"))
+ (ex (string-append out "/share/hdf5_examples/fortran"))
+ (fort (assoc-ref outputs "fortran"))
+ (fbin (string-append fort "/bin"))
+ (flib (string-append fort "/lib"))
+ (finc (string-append fort "/include"))
+ (fex (string-append fort "/share/hdf5_examples/fortran")))
+ (mkdir-p fbin)
+ (mkdir-p flib)
+ (mkdir-p finc)
+ (mkdir-p fex)
+ (rename-file (string-append bin "/h5fc")
+ (string-append fbin "/h5fc"))
+ (for-each (lambda (file)
+ (rename-file file
+ (string-append flib "/" (basename file))))
+ (find-files lib ".*fortran.*"))
+ (for-each (lambda (file)
+ (rename-file file
+ (string-append finc "/" (basename file))))
+ (find-files inc ".*mod"))
+ (for-each (lambda (file)
+ (rename-file file
+ (string-append fex "/" (basename file))))
+ (find-files ex ".*"))
+ (delete-file-recursively ex))
+ #t)))))
(home-page "http://www.hdfgroup.org")
(synopsis "Management suite for extremely large and complex data")
(description "HDF5 is a suite that makes possible the management of