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authorRicardo Wurmus <rekado@elephly.net>2018-03-16 15:40:01 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-03-16 15:40:31 +0100
commitc1c9cc664b600b1de7557e44a67471ef1556f793 (patch)
treec99197c71180691f9c119b380cf835d678046065
parentfe52a215e53514d1857131e3a75104a081e415b6 (diff)
gnu: Add pigx.
* gnu/packages/bioinformatics.scm (pigx): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm36
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fa4a4957b7..78754793a5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12941,6 +12941,42 @@ and interactive quality reports. The pipeline is designed to work with UMI
based methods.")
(license license:gpl3+)))
+(define-public pigx
+ (package
+ (name "pigx")
+ (version "0.0.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/BIMSBbioinfo/pigx/"
+ "releases/download/v" version
+ "/pigx-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1nxb2hbp40yg3j7n56k4dhsd2fl1j8g0wpiiln56prqzljwnlgmf"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("python" ,python)
+ ("pigx-bsseq" ,pigx-bsseq)
+ ("pigx-chipseq" ,pigx-chipseq)
+ ("pigx-rnaseq" ,pigx-rnaseq)
+ ("pigx-scrnaseq" ,pigx-scrnaseq)))
+ (home-page "http://bioinformatics.mdc-berlin.de/pigx/")
+ (synopsis "Analysis pipelines for genomics")
+ (description "PiGx is a collection of genomics pipelines. It includes the
+following pipelines:
+
+@itemize
+@item PiGx BSseq for raw fastq read data of bisulfite experiments
+@item PiGx RNAseq for RNAseq samples
+@item PiGx scRNAseq for single cell dropseq analysis
+@item PiGx ChIPseq for reads from ChIPseq experiments
+@end itemize
+
+All pipelines are easily configured with a simple sample sheet and a
+descriptive settings file. The result is a set of comprehensive, interactive
+HTML reports with interesting findings about your samples.")
+ (license license:gpl3+)))
+
(define-public r-diversitree
(package
(name "r-diversitree")