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authorRicardo Wurmus <rekado@elephly.net>2020-11-21 07:36:40 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-09 12:12:42 +0100
commit471ceb5e5e809af3fa398a14cd402480c9c293cd (patch)
tree2f210bfb83f6ecb93a3b010597885c67ef5e36ce
parentbadb4678bdc20a78812efadb6112e72949ed4487 (diff)
gnu: r-mzr: Fix linking.
* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5 libraries.
-rw-r--r--gnu/packages/bioinformatics.scm9
1 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 788a947347..14a9775323 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9701,9 +9701,14 @@ proteomics packages.")
(lambda _
(substitute* "src/Makevars"
(("\\./boost/libs.*") "")
- (("ARCH_OBJS=" line)
+ ;; This is to avoid having a plain directory on the list of
+ ;; libraries to link.
+ (("\\(RHDF5_LIBS\\)" match)
+ (string-append match "/libhdf5.a"))
+ (("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ")
+ (("\\ARCH_OBJS=" line)
(string-append line
- "\nARCH_LIBS=-lboost_system -lboost_regex \
+ "\nBOOST_LIBS=-lboost_system -lboost_regex \
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
#t)))))
(inputs