diff options
| author | nafkhamdc <navid.afkhami@mdc-berlin.de> | 2024-01-05 12:39:46 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-10 18:39:13 +0100 |
| commit | 2ec29a8c11f4c59eb80d7dcbf476d901ee44f857 (patch) | |
| tree | 38d9ce20db379d823184e98f7f4c0a83bbf9d77c | |
| parent | 6688e9f4bde65ebcf5cb6e530e63e0503e075540 (diff) | |
gnu: Add r-escape.
* gnu/packages/bioconductor.scm (r-escape): New variable.
Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
| -rw-r--r-- | gnu/packages/bioconductor.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a7af5c42ce..8ad4a197d6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1127,6 +1127,46 @@ Ensembl.") Ensembl.") (license license:artistic2.0))) +(define-public r-escape + (package + (name "r-escape") + (version "1.12.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "escape" version)) + (sha256 + (base32 "0bmin69ax7l5x3a0k9mv183277a0hl4znx02y79v2ilkgqkdm7fn")))) + (properties `((upstream-name . "escape"))) + (build-system r-build-system) + (propagated-inputs (list r-biocparallel + r-broom + r-data-table + r-dplyr + r-ggplot2 + r-ggridges + r-gseabase + r-gsva + r-matrix + r-matrixgenerics + r-msigdbr + r-patchwork + r-reshape2 + r-rlang + r-singlecellexperiment + r-stringr + r-summarizedexperiment + r-ucell)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/escape") + (synopsis "Single cell analysis platform for enrichment") + (description + "R-escape streamlines gene set enrichment analysis for single-cell RNA +sequencing. Using raw count information, Seurat objects, or +@code{SingleCellExperiment} format, users can perform and visualize GSEA +across individual cells.") + (license license:gpl2))) + (define-public r-snplocs-hsapiens-dbsnp144-grch37 (package (name "r-snplocs-hsapiens-dbsnp144-grch37") |