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authorRicardo Wurmus <rekado@elephly.net>2022-03-09 11:35:35 +0100
committerRicardo Wurmus <rekado@elephly.net>2022-03-09 11:35:59 +0100
commitca588fdfde849994cc7d399dc9d860ad06332a3e (patch)
tree5601f65e329fc579b26a491ea44b517b01049b95
parent191ff815566699ce33c77fc140404d8f73fa4ab0 (diff)
gnu: Add r-scopeloomr.
* gnu/packages/bioinformatics.scm (r-scopeloomr): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6db75f143f..ada5965e5f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13883,6 +13883,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
are generated using @code{ggplot2}.")
(license license:expat)))
+(define-public r-scopeloomr
+ (let ((commit "99726f5f7da794042036b73924b6a10d6e7b4d5d")
+ (revision "1"))
+ (package
+ (name "r-scopeloomr")
+ (version (git-version "0.13.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/aertslab/SCopeLoomR")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1ci17ms0c0hf7yfp9ckcg7a2y1s0nm19jj3cifsd55hwc0gdglmz"))))
+ (properties `((upstream-name . "SCopeLoomR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-base64enc r-hdf5r r-igraph r-matrix r-plyr r-rjson r-rlist))
+ (home-page "https://github.com/aertslab/SCopeLoomR")
+ (synopsis "Build .loom files and extract data from them")
+ (description
+ "This is an R package to build generic @code{.loom} files aligning with
+the default naming convention of the @code{.loom} format and to integrate
+other data types e.g.: regulons (SCENIC), clusters from Seurat, trajectory
+information... The package can also be used to extract data from @code{.loom}
+files.")
+ (license license:expat))))
+
(define-public vbz-compression
(package
(name "vbz-compression")