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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-08-02 16:21:27 +0200
committerRicardo Wurmus <rekado@elephly.net>2016-08-03 17:20:26 +0200
commit97b9da6897a5026da88de230c32844511f02b29c (patch)
tree8e41acb6a0e06e3d95b7463023cf7f16602eb0b9
parentb7194849ad9d059956d287396a4587a896113d20 (diff)
gnu: Add discrover.
* gnu/packages/bioinformatics.scm (discrover): New variable.
-rw-r--r--gnu/packages/bioinformatics.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ee3e057460..c3ba9634ba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -51,7 +51,9 @@
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
+ #:use-module (gnu packages gtk)
#:use-module (gnu packages image)
+ #:use-module (gnu packages imagemagick)
#:use-module (gnu packages java)
#:use-module (gnu packages linux)
#:use-module (gnu packages logging)
@@ -70,6 +72,7 @@
#:use-module (gnu packages ruby)
#:use-module (gnu packages statistics)
#:use-module (gnu packages tbb)
+ #:use-module (gnu packages tex)
#:use-module (gnu packages textutils)
#:use-module (gnu packages time)
#:use-module (gnu packages tls)
@@ -1603,6 +1606,33 @@ data and settings.")
(license (license:non-copyleft "file://src/COPYING"
"See src/COPYING in the distribution."))))
+(define-public discrover
+ (package
+ (name "discrover")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/maaskola/discrover/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0rah9ja4m0rl5mldd6vag9rwrivw1zrqxssfq8qx64m7961fp68k"))))
+ (build-system cmake-build-system)
+ (arguments `(#:tests? #f)) ; there are no tests
+ (inputs
+ `(("boost" ,boost)
+ ("cairo" ,cairo)))
+ (native-inputs
+ `(("texlive" ,texlive)
+ ("imagemagick" ,imagemagick)))
+ (home-page "http://dorina.mdc-berlin.de/public/rajewsky/discrover/")
+ (synopsis "Discover discriminative nucleotide sequence motifs")
+ (description "Discrover is a motif discovery method to find binding sites
+of nucleic acid binding proteins.")
+ (license license:gpl3+)))
+
(define-public eigensoft
(let ((revision "1")
(commit "b14d1e202e21e532536ff8004f0419cd5e259dc7"))