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authorNavid Afkhami <navid.afkhami@mdc-berlin.de>2023-06-23 17:43:54 +0000
committerRicardo Wurmus <rekado@elephly.net>2023-06-29 22:25:35 +0200
commit94ac93042f09b4ba68b7b64ed1feeebd3dab1ea4 (patch)
tree440aa0e4bd78c3d291726406c11199d9255650d2
parent06d80005917291f5e945ee774d9cd3a3eb8cb979 (diff)
gnu: Add rscape.
* gnu/packages/bioinformatics.scm (rscape): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0999d066bf..f3ea86544d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17253,6 +17253,30 @@ information... The package can also be used to extract data from @code{.loom}
files.")
(license license:expat))))
+(define-public rscape
+ (package
+ (name "rscape")
+ (version "2.0.0.q")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://eddylab.org/software/rscape/"
+ "rscape_v" version ".tar.gz"))
+ (sha256
+ (base32
+ "1jabvm3fzh8iy4803ns12v1fsy28x6wdy8wx4ik8y0mfac4h787q"))))
+ (build-system gnu-build-system)
+ (propagated-inputs (list gsl openmpi))
+ (native-inputs (list automake autoconf))
+ (home-page "https://github.com/EddyRivasLab/R-scape")
+ (synopsis "RNA structural covariation above phylogenetic expectation")
+ (description
+ "R-scape discovers RNA secondary structure consensus elements.
+These elements include riboswitches and ribozymes. It utilizes probabilistic
+modeling of sequence alignments, explicitly considering folding dependencies.
+The tool enables the de novo search for new structural elements and
+facilitates comparative analysis of known RNA families.")
+ (license license:bsd-3)))
+
(define-public r-seurat-utils
(let ((commit "0b6f5b548a49148cfbeaa654e8a618c0a020afa5")
(revision "1"))