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authorRicardo Wurmus <rekado@elephly.net>2021-09-07 11:41:28 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-09-07 11:44:33 +0200
commit62381dce865240b70c08e96f514009a8d62a338c (patch)
tree0bd146bb66a1c576e57e8fbb18092b4f1a4ded3e /gnu/packages/bioconductor.scm
parent4867738c7fc84b34b58b7c910ec0e573431ef8eb (diff)
gnu: Add r-beclear.
* gnu/packages/bioconductor.scm (r-beclear): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ea8a885c5f..b2d687a5e6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13733,6 +13733,39 @@ BAM files. With this package, you can build base-pair coverage matrices for
regions or annotations of your choice from BigWig files.")
(license license:artistic2.0)))
+(define-public r-beclear
+ (package
+ (name "r-beclear")
+ (version "2.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BEclear" version))
+ (sha256
+ (base32
+ "0w18livng2gcmjgvws7pix3gsnj237rs34sgwxsfmn8p5vfx8b30"))))
+ (properties `((upstream-name . "BEclear")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-data-table" ,r-data-table)
+ ("r-futile-logger" ,r-futile-logger)
+ ("r-matrix" ,r-matrix)
+ ("r-outliers" ,r-outliers)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rdpack" ,r-rdpack)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/uds-helms/BEclear")
+ (synopsis "Correction of batch effects in DNA methylation data")
+ (description
+ "This package provides functions to detect and correct for batch effects
+in DNA methylation data. The core function is based on latent factor models
+and can also be used to predict missing values in any other matrix containing
+real numbers.")
+ (license license:gpl3)))
+
(define-public r-tximeta
(package
(name "r-tximeta")