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authorRoel Janssen <roel@gnu.org>2020-04-27 10:37:42 +0200
committerRoel Janssen <roel@gnu.org>2020-04-27 10:37:42 +0200
commitcb1ab0352b1f70dd1a5c56c7bd12de82c0b7fde5 (patch)
tree263f7cb9c7c819fa57d56f1f9c56869379cbd8b0 /gnu/packages/bioconductor.scm
parente658838c62062482f2cdcbc2f94aaae9130c1257 (diff)
gnu: Add r-karyoploter.
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm35
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9540de3b72..d74d1cf706 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2583,6 +2583,41 @@ and regression inferences from RNA-sequencing data.")
gene and isoform level using RNA-seq data")
(license license:artistic2.0)))
+(define-public r-karyoploter
+ (package
+ (name "r-karyoploter")
+ (version "1.12.4")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "karyoploteR" version))
+ (sha256
+ (base32
+ "03jmfgmw35hrgn3pc5lq6pblzhfx9fp4l6dx50rp303lr7kjxp9v"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-regioner" ,r-regioner)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-memoise" ,r-memoise)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-biovizbase" ,r-biovizbase)
+ ("r-digest" ,r-digest)
+ ("r-bezier" ,r-bezier)
+ ("r-bamsignals" ,r-bamsignals)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/karyoploteR/")
+ (synopsis "Plot customizable linear genomes displaying arbitrary data")
+ (description "This package creates karyotype plots of arbitrary genomes and
+offers a complete set of functions to plot arbitrary data on them. It mimicks
+many R base graphics functions coupling them with a coordinate change function
+automatically mapping the chromosome and data coordinates into the plot
+coordinates.")
+ (license license:artistic2.0)))
+
(define-public r-lpsymphony
(package
(name "r-lpsymphony")