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authorRicardo Wurmus <rekado@elephly.net>2021-09-07 14:38:54 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-09-07 14:47:57 +0200
commitccc1b9e5a1d2e61ba6518df07415752388e4a478 (patch)
tree13ae90d613ff75e8e208dbd28a292cc200ae0e6e /gnu/packages/bioconductor.scm
parent32d8a7d3baf0c188c6faa1b77d3bc9e562b3624e (diff)
gnu: Add r-biotip.
* gnu/packages/bioconductor.scm (r-biotip): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1287307033..0d9344f165 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14436,6 +14436,36 @@ expression data. The core algorithm is a Wilcoxon-Mann-Whitney test that is
optimised for high performance.")
(license license:gpl3+)))
+(define-public r-biotip
+ (package
+ (name "r-biotip")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BioTIP" version))
+ (sha256
+ (base32
+ "1i6r8px0fmdjx8frpljppwql74mhx08ibvhs9y3qk91ck5h3f0js"))))
+ (properties `((upstream-name . "BioTIP")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cluster" ,r-cluster)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-hmisc" ,r-hmisc)
+ ("r-igraph" ,r-igraph)
+ ("r-mass" ,r-mass)
+ ("r-psych" ,r-psych)
+ ("r-stringr" ,r-stringr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/xyang2uchicago/BioTIP")
+ (synopsis "R package for characterization of biological tipping-point")
+ (description
+ "This package adopts tipping-point theory to transcriptome profiles to
+help unravel disease regulatory trajectory.")
+ (license license:gpl2)))
+
(define-public r-tximeta
(package
(name "r-tximeta")