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authorNavid Afkhami <navid.afkhami@mdc-berlin.de>2023-08-24 13:28:28 +0000
committerRicardo Wurmus <rekado@elephly.net>2023-08-28 10:19:53 +0200
commitcf941786eea468e28977437b881d84c2c2a66e66 (patch)
treead242ac8d645efddc61090f947eff2cbeffb759a /gnu/packages/bioconductor.scm
parentaa47077a8b40fa6a19f5e33bc618ce20e9bde6e0 (diff)
gnu: Add r-mousegastrulationdata.
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1b62837bbc..0e01f3115d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1708,6 +1708,37 @@ gene expression indicate a role for enhancer priming in immune response\", publi
in Nature Genetics, January 2018.")
(license license:gpl2+)))
+(define-public r-mousegastrulationdata
+ (package
+ (name "r-mousegastrulationdata")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MouseGastrulationData" version
+ 'experiment))
+ (sha256
+ (base32
+ "155kci5isq7mlbvv8mdl2jjpafm3pbv1likhls70aa746spr1h17"))))
+ (properties `((upstream-name . "MouseGastrulationData")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocgenerics
+ r-bumpymatrix
+ r-experimenthub
+ r-s4vectors
+ r-singlecellexperiment
+ r-spatialexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/MarioniLab/MouseGastrulationData")
+ (synopsis
+ "Single-Cell omics data across mouse gastrulation and early organogenesis")
+ (description
+ "This package provides processed and raw count data for single-cell RNA
+sequencing. In addition, this package offers single-cell ATAC-seq, and
+@code{seqFISH} (spatial transcriptomic) experiments performed along a
+timecourse of mouse gastrulation and early organogenesis.")
+ (license license:gpl3)))
+
(define-public r-minfidata
(package
(name "r-minfidata")