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authorRicardo Wurmus <rekado@elephly.net>2019-03-13 13:17:11 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-13 13:17:52 +0100
commit0fbaf1956b090d63cb21aa45dd213ea81ac34d00 (patch)
tree5d2f6f2e2085b8407eb55d5b6113deba8a9aeb85 /gnu/packages/bioconductor.scm
parent34a24f95ece7be7e5174513091ecd3c4974ce631 (diff)
gnu: Add r-minfi.
* gnu/packages/bioconductor.scm (r-minfi): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm49
1 files changed, 49 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 34f5ceb5aa..79eab6b67d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2234,3 +2234,52 @@ Bayes Analyses of Microarrays} (EBAM).")
to identify differentially methylated regions in epigenetic epidemiology
studies.")
(license license:artistic2.0)))
+
+(define-public r-minfi
+ (package
+ (name "r-minfi")
+ (version "1.28.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "minfi" version))
+ (sha256
+ (base32
+ "1sjwwqb0syngvj75saaky9y06hbxsawhhcmfvavzkhicxipafv7r"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-beanplot" ,r-beanplot)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bumphunter" ,r-bumphunter)
+ ("r-data-table" ,r-data-table)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-delayedmatrixstats" ,r-delayedmatrixstats)
+ ("r-genefilter" ,r-genefilter)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-geoquery" ,r-geoquery)
+ ("r-hdf5array" ,r-hdf5array)
+ ("r-illuminaio" ,r-illuminaio)
+ ("r-iranges" ,r-iranges)
+ ("r-lattice" ,r-lattice)
+ ("r-limma" ,r-limma)
+ ("r-mass" ,r-mass)
+ ("r-mclust" ,r-mclust)
+ ("r-nlme" ,r-nlme)
+ ("r-nor1mix" ,r-nor1mix)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-quadprog" ,r-quadprog)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-reshape" ,r-reshape)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-siggenes" ,r-siggenes)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://github.com/hansenlab/minfi")
+ (synopsis "Analyze Illumina Infinium DNA methylation arrays")
+ (description
+ "This package provides tools to analyze and visualize Illumina Infinium
+methylation arrays.")
+ (license license:artistic2.0)))