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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:19:21 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:23:20 +0100
commit40a650571155933794523279adc435fd7d84fd2a (patch)
tree3cc7124aaa235d8d040d7f7e3b5def5538291678 /gnu/packages/bioconductor.scm
parent66e35ce63b346f5f13b2d48a76bc0da14637c58c (diff)
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 316be1ca42..c1c987e82d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -100,6 +100,37 @@ RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats
Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.")
(license license:artistic2.0)))
+(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
+ (package
+ (name "r-bsgenome-hsapiens-1000genomes-hs37d5")
+ (version "0.99.1")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Hsapiens.1000genomes.hs37d5_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
+ (properties
+ `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/")
+ (synopsis "Full genome sequences for Homo sapiens")
+ (description
+ "This package provides full genome sequences for Homo sapiens from
+1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-hsapiens-ucsc-hg19-masked
(package
(name "r-bsgenome-hsapiens-ucsc-hg19-masked")