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authorRicardo Wurmus <rekado@elephly.net>2019-03-13 12:53:03 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-13 13:17:52 +0100
commit925fcdbb7943f04e1f0a8ac79c236d3543a9945b (patch)
tree9e0daf12e66b0ed01c7d3f10fa454ba0adab8512 /gnu/packages/bioconductor.scm
parent251e08301a514fa035feb17fbb0173f9a0914015 (diff)
gnu: Add r-mast.
* gnu/packages/bioconductor.scm (r-mast): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index adc0e846d2..782b769225 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1932,3 +1932,36 @@ performance metrics for evaluation of ranking and binary
classification (assignment) methods. It also contains a Shiny application for
interactive exploration of results.")
(license license:gpl2+)))
+
+(define-public r-mast
+ (package
+ (name "r-mast")
+ (version "1.8.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MAST" version))
+ (sha256
+ (base32
+ "0rhx655dza0m6yg9jcfz2nmxqahvxx2l91kqgyp7qai0bzz9d9ix"))))
+ (properties `((upstream-name . "MAST")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-data-table" ,r-data-table)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-plyr" ,r-plyr)
+ ("r-progress" ,r-progress)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-stringr" ,r-stringr)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://github.com/RGLab/MAST/")
+ (synopsis "Model-based analysis of single cell transcriptomics")
+ (description
+ "This package provides methods and models for handling zero-inflated
+single cell assay data.")
+ (license license:gpl2+)))