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authorRicardo Wurmus <rekado@elephly.net>2019-03-13 13:15:24 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-13 13:17:52 +0100
commitf9201d670406e1256ef1876f7a765b21faf224bc (patch)
tree04a4cd2ce5c8bfe595de2594878a68ed227efc6e /gnu/packages/bioconductor.scm
parentf088775799f4470d8c7e2c16380f83eea4f24e0e (diff)
gnu: Add r-geoquery.
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a95fbbf3eb..c9d5755963 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2123,3 +2123,34 @@ distributions.")
different normalization schemes for single-cell RNA-seq and other
high-throughput analyses.")
(license license:artistic2.0)))
+
+(define-public r-geoquery
+ (package
+ (name "r-geoquery")
+ (version "2.50.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GEOquery" version))
+ (sha256
+ (base32
+ "074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6"))))
+ (properties `((upstream-name . "GEOquery")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-dplyr" ,r-dplyr)
+ ("r-httr" ,r-httr)
+ ("r-limma" ,r-limma)
+ ("r-magrittr" ,r-magrittr)
+ ("r-readr" ,r-readr)
+ ("r-tidyr" ,r-tidyr)
+ ("r-xml2" ,r-xml2)))
+ (home-page "https://github.com/seandavi/GEOquery/")
+ (synopsis "Get data from NCBI Gene Expression Omnibus (GEO)")
+ (description
+ "The NCBI Gene Expression Omnibus (GEO) is a public repository of
+microarray data. Given the rich and varied nature of this resource, it is
+only natural to want to apply BioConductor tools to these data. GEOquery is
+the bridge between GEO and BioConductor.")
+ (license license:gpl2)))