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authorRicardo Wurmus <rekado@elephly.net>2020-12-07 16:44:23 +0100
committerRicardo Wurmus <rekado@elephly.net>2020-12-09 12:12:48 +0100
commit4617cc7fd509cc73703e5b273c634f995bb69a5d (patch)
treec081999937b6c7e533600ce5805cbfaa94673af6 /gnu/packages/bioconductor.scm
parent7601015fc9d51a2f2ecdd676bcae51ed7121d30d (diff)
gnu: r-rhtslib: Propagate zlib.
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here... [propagated-inputs]: ...to here. (r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5, r-methylkit)[inputs]: Remove zlib. * gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow, r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm12
1 files changed, 0 insertions, 12 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 5f524f310c..5a3d638434 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1726,8 +1726,6 @@ signal in the input, that lead to spurious peaks during peak calling.")
"0irhqsi6rrkrkc7dhwmfpqfd0mnigs17027czcx8vgbrbra4lcvd"))))
(properties `((upstream-name . "DiffBind")))
(build-system r-build-system)
- (inputs
- `(("zlib" ,zlib)))
(propagated-inputs
`(("r-amap" ,r-amap)
("r-apeglm" ,r-apeglm)
@@ -5664,8 +5662,6 @@ index.")
"032m01q34nnmvbhcb2g3pz2fqmgcw5464m74m1m0h7x9bl04a5k8"))))
(properties `((upstream-name . "QuasR")))
(build-system r-build-system)
- (inputs
- `(("zlib" ,zlib)))
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
@@ -6049,8 +6045,6 @@ cluster count and membership by stability evidence in unsupervised analysis.")
(("\\(RHDF5_LIBS\\)" match)
(string-append match "/libhdf5.a")))
#t)))))
- (inputs
- `(("zlib" ,zlib)))
(native-inputs
`(("r-knitr" ,r-knitr)
("pkg-config" ,pkg-config)))
@@ -6150,8 +6144,6 @@ change point detection.")
(("\\(RHDF5_LIBS\\)" match)
(string-append match "/libhdf5.a")))
#t)))))
- (inputs
- `(("zlib" ,zlib)))
(propagated-inputs
`(("r-bh" ,r-bh)
("r-biobase" ,r-biobase)
@@ -6332,8 +6324,6 @@ for other R packages to compile and link against.")
(("\\{h5lib\\}" match)
(string-append match "/libhdf5.a")))
#t)))))
- (inputs
- `(("zlib" ,zlib)))
(propagated-inputs
`(("r-aws-s3" ,r-aws-s3)
("r-aws-signature" ,r-aws-signature)
@@ -6997,8 +6987,6 @@ with multiple R processes supported by the package @code{parallel}.")
`(("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
("r-rhtslib" ,r-rhtslib)))
- (inputs
- `(("zlib" ,zlib))) ; This comes from rhtslib.
(home-page "https://bioconductor.org/packages/seqbias/")
(synopsis "Estimation of per-position bias in high-throughput sequencing data")
(description