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authorzimoun <zimon.toutoune@gmail.com>2021-03-15 14:01:58 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-15 14:06:24 +0100
commitbf612ead766ee5afcdccd7c8ab003b791ecea9df (patch)
tree7b44ab8c0f9a92b03a17c70e97997df972ccd5e5 /gnu/packages/bioconductor.scm
parent082f3c54337aaba40b978dfa9963f8ed6f20123d (diff)
gnu: r-variantannotation: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here... * gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm38
1 files changed, 38 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fb0127b7ca..c4df090a05 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2051,6 +2051,44 @@ experimental designs is facilitated by a consistently implemented sample
annotation infrastructure.")
(license license:artistic2.0)))
+(define-public r-variantannotation
+ (package
+ (name "r-variantannotation")
+ (version "1.36.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "VariantAnnotation" version))
+ (sha256
+ (base32
+ "1sl0l6v05lfglj281nszma0h5k234md7rn2pdah8vs2d4iq3kimw"))))
+ (properties
+ `((upstream-name . "VariantAnnotation")))
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-dbi" ,r-dbi)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-matrixgenerics" ,r-matrixgenerics)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-rhtslib" ,r-rhtslib)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/VariantAnnotation")
+ (synopsis "Package for annotation of genetic variants")
+ (description "This R package can annotate variants, compute amino acid
+coding changes and predict coding outcomes.")
+ (license license:artistic2.0)))
+
(define-public r-geneplotter
(package
(name "r-geneplotter")