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authorRicardo Wurmus <rekado@elephly.net>2018-10-08 14:18:48 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-10-08 14:19:04 +0200
commitf6e9976393c80d12b5f3235bf7fe593077cbc9d1 (patch)
treef36b84ba9dfdbb4a8ddcd1793e47a1317fbce570 /gnu/packages/bioconductor.scm
parent1deab8cbf6d93fec3b119de71374488087427ba8 (diff)
gnu: Add r-dnabarcodes.
* gnu/packages/bioconductor.scm (r-dnabarcodes): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 108f3c398f..1b779855b2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -886,3 +886,30 @@ Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in
order to evaluate synthesis, processing and degradation rates and assess via
modeling the rates that determines changes in mature mRNA levels.")
(license license:gpl2)))
+
+(define-public r-dnabarcodes
+ (package
+ (name "r-dnabarcodes")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DNABarcodes" version))
+ (sha256
+ (base32
+ "0xhna7f0kr7pp2hqwara5i57m9mdr65shflfxiyw6yy3g90pgb5x"))))
+ (properties `((upstream-name . "DNABarcodes")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://bioconductor.org/packages/DNABarcodes")
+ (synopsis "Create and analyze DNA barcodes")
+ (description
+ "This package offers tools to create DNA barcode sets capable of
+correcting insertion, deletion, and substitution errors. Existing barcodes
+can be analyzed regarding their minimal, maximal and average distances between
+barcodes. Finally, reads that start with a (possibly mutated) barcode can be
+demultiplexed, i.e. assigned to their original reference barcode.")
+ (license license:gpl2)))