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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-17 11:09:20 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-06-30 15:29:45 +0200
commitdd74da619059465d67a804948e750c0470cfc6f8 (patch)
tree362dd594adf07438b78b7f5b5472db7b1289ad52 /gnu/packages/bioconductor.scm
parent8c85cc74f0293eb747f981dd63cfec3c068325de (diff)
gnu: Add r-amountain.
* gnu/packages/bioconductor.scm (r-amountain): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f58b90f4b5..20f277b119 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,30 @@ using the linear model features implemented in limma. Standard Bioconductor
objects are used so that other packages could be used as well.")
(license license:gpl3)))
+(define-public r-amountain
+ (package
+ (name "r-amountain")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AMOUNTAIN" version))
+ (sha256
+ (base32
+ "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"))))
+ (properties `((upstream-name . "AMOUNTAIN")))
+ (build-system r-build-system)
+ (inputs (list gsl))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AMOUNTAIN")
+ (synopsis "Modules for multilayer weighted gene co-expression networks")
+ (description
+ "This package provides a pure data-driven gene network, @dfn{WGCN}(weighted
+gene co-expression network) could be constructed only from expression profile.
+Different layers in such networks may represent different time points, multiple
+conditions or various species. @code{AMOUNTAIN} aims to search active modules
+in multi-layer WGCN using a continuous optimization approach.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")