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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-17 16:24:15 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-07-01 10:28:22 +0200
commitec23d7caa871471ad9425a21b34e1f9692a524d4 (patch)
treefb25d2b0b6da0a6f1ed66cf1e430be0adf6c62c2 /gnu/packages/bioconductor.scm
parent3109d4a30ec54b74a8bb844a89181c074958279e (diff)
gnu: Add r-antiprofiles.
* gnu/packages/bioconductor.scm (r-antiprofiles): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8aa0b5bd85..adf0542410 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2197,6 +2197,32 @@ as @code{genesInRange()}, @code{geneToExon()}, @code{exonDetails()}, etc.
Functions to plot gene architecture and BAM file data are also provided.")
(license license:gpl2)))
+(define-public r-antiprofiles
+ (package
+ (name "r-antiprofiles")
+ (version "1.36.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "antiProfiles" version))
+ (sha256
+ (base32
+ "1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40"))))
+ (properties `((upstream-name . "antiProfiles")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-locfit
+ r-matrixstats))
+ (home-page "https://github.com/HCBravoLab/antiProfiles")
+ (synopsis "Implementation of gene expression anti-profiles")
+ (description
+ "This package implements the gene expression anti-profiles method.
+Anti-profiles are a new approach for developing cancer genomic signatures that
+specifically take advantage of gene expression heterogeneity. They explicitly
+model increased gene expression variability in cancer to define robust and
+reproducible gene expression signatures capable of accurately distinguishing
+tumor samples from healthy controls.")
+ (license license:artistic2.0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")