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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-03-20 17:00:05 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-20 18:25:10 +0100 |
| commit | 2336d5f57a4422d9c97db85e1c9a47763f23ad3c (patch) | |
| tree | fb60c9b5c951553dc53f6ba5a394510e356fac21 /gnu/packages/bioconductor.scm | |
| parent | 40b79eafeec423e8f35d90fed6df0377a0729634 (diff) | |
gnu: Add r-annotationhubdata.
* gnu/packages/bioconductor.scm (r-annotationhubdata): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 64f8f839c2..d532360f7e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2707,6 +2707,57 @@ Powerful interactive and dynamic figures generated by animalcules enable users to understand their data better and discover new insights.") (license license:artistic2.0))) +(define-public r-annotationhubdata + (package + (name "r-annotationhubdata") + (version "1.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationHubData" version)) + (sha256 + (base32 "0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95")))) + (properties `((upstream-name . "AnnotationHubData"))) + (build-system r-build-system) + (arguments + (list + #:phases + '(modify-phases %standard-phases + (add-before 'install 'set-home + (lambda _ (setenv "HOME" "/tmp")))))) + (propagated-inputs + (list r-annotationdbi + r-annotationforge + r-annotationhub + r-biobase + r-bioccheck + r-biocgenerics + r-biocmanager + r-biocviews + r-biostrings + r-dbi + r-futile-logger + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-graph + r-iranges + r-jsonlite + r-organismdbi + r-rcurl + r-rsamtools + r-rsqlite + r-rtracklayer + r-s4vectors + r-xml)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AnnotationHubData") + (synopsis "Transform public data resources into Bioconductor data structures") + (description + "This package provides tools to acquire, annotate, convert and store data +for use in Bioconductor’s AnnotationHub.") + (license license:artistic2.0))) + (define-public r-anvil (package (name "r-anvil") |