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author | Ricardo Wurmus <rekado@elephly.net> | 2023-07-19 15:03:01 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-07-19 15:29:14 +0200 |
commit | 5a20a14c3e0ccf762b54d60ef176b72b1e565c61 (patch) | |
tree | 9133e16acd68b9c4f50d7372ca2c4c8da4df3756 /gnu/packages/bioconductor.scm | |
parent | 9d45783d777eda4874570f5cba29a9e4be9a0abf (diff) |
gnu: Add r-raggedexperiment.
* gnu/packages/bioconductor.scm (r-raggedexperiment): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 656bb1a9c0..bab399a9e9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7363,6 +7363,39 @@ matrix to solve the memory problem.") the Human Protein Atlas project.") (license license:artistic2.0))) +(define-public r-raggedexperiment + (package + (name "r-raggedexperiment") + (version "1.24.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "RaggedExperiment" version)) + (sha256 + (base32 + "1xs7dz5mkh9zs078g2a0izij8vxrwhzh7gyjglp057gicsca0hal")))) + (properties `((upstream-name . "RaggedExperiment"))) + (build-system r-build-system) + (propagated-inputs (list r-biocgenerics + r-genomeinfodb + r-genomicranges + r-iranges + r-matrix + r-matrixgenerics + r-s4vectors + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/RaggedExperiment") + (synopsis "Representation of sparse experiments and assays across samples") + (description + "This package provides a flexible representation of copy number, +mutation, and other data that fit into the ragged array schema for genomic +location data. The basic representation of such data provides a rectangular +flat table interface to the user with range information in the rows and +samples/specimen in the columns. The @code{RaggedExperiment} class derives +from a @code{GRangesList} representation and provides a semblance of a +rectangular dataset.") + (license license:artistic2.0))) + (define-public r-rhtslib (package (name "r-rhtslib") |