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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-08-06 10:07:36 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-08-06 10:07:36 +0200 |
| commit | 378d94e51b00c30b19a39154278d01f1f3c4dbc1 (patch) | |
| tree | 0c9ed3a1c1b6db778b05ad03fa8edd91cfb737f4 /gnu/packages/bioinformatics.scm | |
| parent | d350d5e71434704d147b1252d21e46daf6bb9885 (diff) | |
| parent | 6a5198170ed5f10e1eee2e25fc6a39f3f33a40fd (diff) | |
Merge remote-tracking branch 'origin/master' into wip-texlive
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 11 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5412440fb1..bcec9cd279 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com> ;;; Copyright © 2018 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -4206,8 +4207,15 @@ command, or queried for specific k-mers with @code{jellyfish query}.") (modify-phases %standard-phases (add-after 'unpack 'set-cc (lambda _ (setenv "CC" "gcc") #t)) - ;; FIXME: This fails with "permission denied". - (delete 'reset-gzip-timestamps)))) + + (add-before 'reset-gzip-timestamps 'make-files-writable + (lambda* (#:key outputs #:allow-other-keys) + ;; Make sure .gz files are writable so that the + ;; 'reset-gzip-timestamps' phase can do its work. + (let ((out (assoc-ref outputs "out"))) + (for-each make-file-writable + (find-files out "\\.gz$")) + #t)))))) (native-inputs `(("python-cython" ,python-cython) ("python-pytest" ,python-pytest) @@ -8427,7 +8435,7 @@ library implementing most of the pipeline's features.") `(("r-minimal" ,r-minimal) ("r-rcas" ,r-rcas) ("guile-next" ,guile-2.2) - ("guile-json" ,guile-json) + ("guile-json" ,guile-json-1) ("guile-redis" ,guile-redis))) (native-inputs `(("pkg-config" ,pkg-config))) |