diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-01-20 10:55:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-01-20 11:06:43 +0100 |
| commit | 43b7a033e3e96b7f3681e2693d63f1fb6b5af26e (patch) | |
| tree | 343572efe3cb88ef139100043b45bf85bd9161b0 /gnu/packages/bioinformatics.scm | |
| parent | ddfe68ebbe502508381af844031a44dc0a022c60 (diff) | |
gnu: Add r-tsis.
* gnu/packages/bioinformatics.scm (r-tsis): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bac094b1a5..1d473380b2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8216,6 +8216,38 @@ clustering analysis, differential analysis, motif inference and exploration of single cell ATAC-seq sequencing data.") (license license:gpl3))) +(define-public r-tsis + (let ((commit "24460298fbe1d26e4da390f6e4f3d4d9d62334dc") + (revision "1")) + (package + (name "r-tsis") + (version (git-version "0.2.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/wyguo/TSIS") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "17c8i25iwhldvs3c51m0wny40iffm8szzijalpwrxhzbv0xa94rb")))) + (properties `((upstream-name . "TSIS"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/wyguo/TSIS") + (synopsis "Time-series isoform switch of alternative splicing") + (description + "TSIS is used for detecting transcript isoform switches in time-series +data. Transcript isoform switches occur when a pair of alternatively spliced +isoforms reverse the order of their relative expression levels. TSIS +characterizes the transcript switch by defining the isoform switch time-points +for any pair of transcript isoforms within a gene. In addition, this tool +describes the switch using five different features or metrics. Also it +filters the results with user’s specifications and visualizes the results +using different plots for the user to examine further details of the +switches.") + (license license:gpl3)))) + (define-public r-umi4cpackage (let ((commit "88b07d896a137418ba6c31c2474b9dbe1d86fc20") (revision "1")) |