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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-06 14:53:52 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-10 18:39:13 +0100 |
| commit | 6688e9f4bde65ebcf5cb6e530e63e0503e075540 (patch) | |
| tree | 8695af1b62adda51da27593f4451d4bb22f9fcae /gnu/packages/bioinformatics.scm | |
| parent | 16a277e0a9a2dba0dc6c63c5f9df1adff7c88371 (diff) | |
gnu: Add python-telomerecat.
* gnu/packages/bioinformatics.scm (python-telomerecat): New variable.
Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 04af72bc95..b6384e66ed 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2447,6 +2447,30 @@ operations: @end itemize") (license license:asl2.0))) +(define-public python-telomerecat + (package + (name "python-telomerecat") + (version "4.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "telomerecat" version)) + (sha256 + (base32 "16mfdqmp0j6g3h26h59334w9lqb4qihqrlzwvgznj0fiqs1rkxn2")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-click python-numpy python-pandas + python-parabam python-pysam)) + (home-page "https://github.com/cancerit/telomerecat") + (synopsis "Telomere computational analysis tool") + (description "Telomerecat is a tool for estimating the average telomere +length (TL) for a paired end, whole genome sequencing (WGS) sample. + +Telomerecat is adaptable, accurate and fast. The algorithm accounts for +sequencing amplification artifacts, anneouploidy (common in cancer samples) +and noise generated by WGS. For a high coverage WGS BAM file of around 100GB +telomerecat can produce an estimate in ~1 hour.") + (license license:gpl3))) + (define-public python-bioframe (package (name "python-bioframe") |