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author | Ricardo Wurmus <rekado@elephly.net> | 2021-05-04 10:11:34 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-05-04 10:11:34 +0200 |
commit | 7694acebd18d9b32fd01b70819c1e79de05b4f52 (patch) | |
tree | b198d6d5b13a3124318c2f08ed855925d66ffab5 /gnu/packages/bioinformatics.scm | |
parent | b602ec9fbad8e9ef30a41ed7d6432b0e4aff7516 (diff) |
gnu: r-summarizedexperiment: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 34 |
1 files changed, 0 insertions, 34 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index eda7416fb2..de76e67f57 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7838,40 +7838,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-summarizedexperiment - (package - (name "r-summarizedexperiment") - (version "1.20.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "SummarizedExperiment" version)) - (sha256 - (base32 - "04x6d4mcsnvz6glkmf6k2cv3fs8zk03i9rvv0ahpl793n8l411ps")))) - (properties - `((upstream-name . "SummarizedExperiment"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-delayedarray" ,r-delayedarray) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-matrix" ,r-matrix) - ("r-matrixgenerics" ,r-matrixgenerics) - ("r-s4vectors" ,r-s4vectors))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/SummarizedExperiment") - (synopsis "Container for representing genomic ranges by sample") - (description - "The SummarizedExperiment container contains one or more assays, each -represented by a matrix-like object of numeric or other mode. The rows -typically represent genomic ranges of interest and the columns represent -samples.") - (license license:artistic2.0))) - (define-public r-genomicalignments (package (name "r-genomicalignments") |