diff options
| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-06-05 17:05:22 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-06-05 17:11:14 +0200 |
| commit | 91e75bb35fd545dc3dc5275428ca4cc17123c76c (patch) | |
| tree | 83cd0f640f76b0c48b5424819f7486246d75d906 /gnu/packages/bioinformatics.scm | |
| parent | 940665301de4effd065d24c167f619286f2adf4c (diff) | |
gnu: Add python-readpaf.
* gnu/packages/bioinformatics.scm (python-readpaf): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0b67d8fbe6..251e46061f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1998,6 +1998,25 @@ alignments and perform the following operations: ") (license license:expat))) +(define-public python-readpaf + (package + (name "python-readpaf") + (version "0.0.10") + (source (origin + (method url-fetch) + (uri (pypi-uri "readpaf" version)) + (sha256 + (base32 + "15m6ffks4zwpp1ycwk6n02py6mw2yh7qr0vhpc178b91gldr97ia")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-pandas)) + (home-page "https://github.com/alexomics/read-paf") + (synopsis "Minimap2 PAF file reader") + (description + "This is a fast parser for minimap2 PAF (Pairwise mApping Format) +files.") + (license license:expat))) + (define-public bioperl-minimal (package (name "bioperl-minimal") |