diff options
| author | nafkhamdc <navid.afkhami@mdc-berlin.de> | 2024-02-14 20:27:46 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-02-15 11:53:29 +0100 |
| commit | fb79e589957880c95bb4e8e57e2a5023c8a696d6 (patch) | |
| tree | 3d8baf72561b9e2a994b437c8c6eb53c71e8ff17 /gnu/packages/bioinformatics.scm | |
| parent | 06014750338159a03a6374d7ebdd783c210b3715 (diff) | |
gnu: Add python-ega-download-client.
* gnu/packages/bioinformatics.scm (python-ega-download-client): New variable.
Change-Id: I3233774975989f912281ab2e6ec6ad3362cae18b
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bcfe3c2656..84577ef760 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2525,6 +2525,45 @@ Python.") ;; licensed lgpl2.1+ (license (list license:expat license:lgpl2.1+)))) +(define-public python-ega-download-client + (package + (name "python-ega-download-client") + (version "5.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/EGA-archive/ega-download-client") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0k9rfq2yyvfxs5sq9lsm8krp9ddx4s18hv85ikf3b37zv24kpwjk")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + '(list "-k" + ;; These tests fail because they require internet access. + (string-append "not test_download.py" + " and not test_htsget.py" + " and not test_commands.py")) + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + (("==") ">="))))))) + (propagated-inputs (list python-htsget python-psutil python-requests + python-tqdm python-urllib3)) + (native-inputs (list python-coverage python-pytest python-pyfakefs + python-responses)) + (home-page "https://github.com/EGA-archive/ega-download-client") + (synopsis "EGA download client") + (description + "PyEGA3 is a tool for viewing and downloading files from authorized EGA +datasets.") + (license license:asl2.0))) + (define-public python-scdamandtools (package (name "python-scdamandtools") |