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| author | Efraim Flashner <efraim@flashner.co.il> | 2024-02-28 11:34:03 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2024-02-28 11:35:27 +0200 |
| commit | aa1d419586c387ba07f323196bfb92b6237b032e (patch) | |
| tree | 66ca756b605118ed0e0b89b94df2aa7d54b04921 /gnu/packages/bioinformatics.scm | |
| parent | 8c0282cf543fe205a5b89201cd7bb8889121a07c (diff) | |
gnu: bowtie1: Update to 1.3.1.
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.1.
[arguments]: Add test-target.
[inputs]: Use newer tbb.
Change-Id: I7af6aa248e5db9f91ce84fba9ba741621b110479
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3f12b28058..1613961c64 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4,7 +4,7 @@ ;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2020, 2021 Roel Janssen <roel@gnu.org> -;;; Copyright © 2016-2023 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016-2024 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2020, 2022 Marius Bakke <marius@gnu.org> ;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> @@ -3756,14 +3756,14 @@ gapped, local, and paired-end alignment modes.") (define-public bowtie1 (package (name "bowtie1") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/" version "/bowtie-" version "-src.zip")) (sha256 (base32 - "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04")) + "0q87nhgj9wrnbazcpvqp4594hmyh1isi3s9b2wlghvl4afm1fdg2")) (modules '((guix build utils))) (snippet '(substitute* "Makefile" @@ -3772,7 +3772,8 @@ gapped, local, and paired-end alignment modes.") (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\""))))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; no "check" target + `(#:tests? #f ; Tests need various perl modules + #:test-target "simple-test" #:make-flags ,#~(list "CC=gcc" "all" (string-append "prefix=" #$output)) @@ -3780,7 +3781,7 @@ gapped, local, and paired-end alignment modes.") (modify-phases %standard-phases (delete 'configure)))) (inputs - (list python-wrapper tbb-2020 zlib)) + (list python-wrapper tbb zlib)) (supported-systems '("x86_64-linux")) (home-page "https://bowtie-bio.sourceforge.net/index.shtml") (synopsis "Fast aligner for short nucleotide sequence reads") |