diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2024-01-09 13:14:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-01-16 12:44:36 +0100 |
| commit | 3a58a3ef053558bf229530c1792de23ef2651c44 (patch) | |
| tree | 5cf96dcfa1ed8dc61ee20623c439286ccfc2a719 /gnu/packages/bioinformatics.scm | |
| parent | 5a7f7156a2aeae564db561e2e5d613083dae2b4a (diff) | |
gnu: cnvkit: Update to 0.9.10.
* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.10.
[arguments]: Remove.
[inputs]: Add r-minimal.
Change-Id: Iaa27fd3dddc507c7a955441f066d4b0e3b8f1757
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 3 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 953a886270..8ae2b249a9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17907,7 +17907,7 @@ polymorphisms) and indels with respect to a reference genome and more.") (define-public cnvkit (package (name "cnvkit") - (version "0.9.9") + (version "0.9.10") (source (origin (method git-fetch) @@ -17916,17 +17916,8 @@ polymorphisms) and indels with respect to a reference genome and more.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1q4l7jhr1k135an3n9aa9wsid5lk6fwxb0hcldrr6v6y76zi4gj1")))) + (base32 "0r303pqjg70zpxa564bavbfj99c6di0dafgqqwx2vh4vfsiif94q")))) (build-system pyproject-build-system) - (arguments - (list - #:phases - '(modify-phases %standard-phases - ;; See upstream commit eee0f6eaec57d5c6e58142d661979f3aacc5f76a - (add-after 'unpack 'compatibility - (lambda _ - (substitute* "setup.py" - (("'joblib.*") ""))))))) (propagated-inputs (list python-biopython python-future @@ -17941,6 +17932,7 @@ polymorphisms) and indels with respect to a reference genome and more.") python-scipy ;; R packages r-dnacopy)) + (inputs (list r-minimal)) ;for tests (home-page "https://cnvkit.readthedocs.org/") (synopsis "Copy number variant detection from targeted DNA sequencing") (description |