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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2024-04-23 13:25:46 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-05-06 11:26:54 +0200 |
| commit | 64fcc49dc54b4fd55f4f6a9d2d126631f74e5144 (patch) | |
| tree | ad1f2b5ef1d03c3f84471e855547ac374322986b /gnu/packages/bioinformatics.scm | |
| parent | 2c52bbd16d5e12f7c67e3d26c593af64365ed4ee (diff) | |
gnu: Add r-metadeconfoundr.
* gnu/packages/bioinformatics.scm (r-metadeconfoundr): New variable.
Change-Id: I733fb464d2a3c7fd1335826be9f23e2610e6fd60
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3dff39e866..5775d01c8a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11890,6 +11890,47 @@ analysis of cell types, subtypes, transcriptional gradients,cell-cycle variation, gene modules and their regulatory models and more.") (license license:expat)))) +(define-public r-metadeconfoundr + ;; There are some relevant updates after the release of version 0.3.0. + (let ((commit "90aec0226c5128bfcbbc08903452eff460d21424") + (revision "1")) + (package + (name "r-metadeconfoundr") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/TillBirkner/metadeconfoundR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zkqar27p5qwq46xbxsw5x1pl50xbkgqiizw5bydlyhwb0ga2f3h")))) + (properties `((upstream-name . "metadeconfoundR"))) + (build-system r-build-system) + (propagated-inputs (list r-bigmemory + r-detectseparation + r-doparallel + r-dosnow + r-foreach + r-futile-logger + r-ggplot2 + r-lme4 + r-lmtest + r-reshape2 + r-snow)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/TillBirkner/metadeconfoundR") + (synopsis "Check multiple covariates for potenial confounding effects") + (description + "This package detects naive associations between omics features and +metadata in cross-sectional data-sets using non-parametric tests. In a second +step, confounding effects between metadata associated to the same omics +feature are detected and labeled using nested post-hoc model comparison tests. +The generated output can be graphically summarized using the built-in plotting +function.") + (license license:gpl2)))) + (define-public r-sleuth (package (name "r-sleuth") |