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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-10-05 13:47:57 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-10-05 13:47:57 +0200 |
| commit | 3f627bf56bfc6c1904cfea4c73d0a5afc72b25ee (patch) | |
| tree | 65823000c976d37ce866f3a3fda78f787ed98de6 /gnu/packages/bioinformatics.scm | |
| parent | 9ed65e6af77893b658a7159b091b5002892c2f95 (diff) | |
gnu: cd-hit: Update to 4.8.1.
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.8.1.
[arguments]: Do not use quasiquote; remove trailing #T from build phases.
[inputs]: Add zlib.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 15 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0404253193..bb1aeac3a3 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2429,26 +2429,27 @@ are not included due to their size.") (define-public cd-hit (package (name "cd-hit") - (version "4.6.8") + (version "4.8.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/weizhongli/cdhit" "/releases/download/V" version "/cd-hit-v" version - "-2017-0621-source.tar.gz")) + "-2019-0228.tar.gz")) (sha256 (base32 - "1b4mwm2520ixjbw57sil20f9iixzw4bkdqqwgg1fc3pzm6rz4zmn")))) + "1phmfhgcpyfd6kj7jwzw976613lcpv1wc2pzfdfaxla062x2s5r6")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; there are no tests - #:make-flags - ;; Executables are copied directly to the PREFIX. - ,#~(list (string-append "PREFIX=" #$output "/bin") - ;; Support longer sequences (e.g. Pacbio sequences) - "MAX_SEQ=60000000") - #:phases - (modify-phases %standard-phases + (list + #:tests? #f ; there are no tests + #:make-flags + ;; Executables are copied directly to the PREFIX. + #~(list (string-append "PREFIX=" #$output "/bin") + ;; Support longer sequences (e.g. Pacbio sequences) + "MAX_SEQ=60000000") + #:phases + '(modify-phases %standard-phases ;; No "configure" script (delete 'configure) ;; Remove sources of non-determinism @@ -2458,15 +2459,13 @@ are not included due to their size.") ((" \\(built on \" __DATE__ \"\\)") "")) (substitute* "cdhit-common.c++" (("__DATE__") "\"0\"") - (("\", %s, \" __TIME__ \"\\\\n\", date") "")) - #t)) + (("\", %s, \" __TIME__ \"\\\\n\", date") "")))) ;; The "install" target does not create the target directory. (add-before 'install 'create-target-dir (lambda* (#:key outputs #:allow-other-keys) - (mkdir-p (string-append (assoc-ref outputs "out") "/bin")) - #t))))) + (mkdir-p (string-append (assoc-ref outputs "out") "/bin"))))))) (inputs - (list perl)) + (list perl zlib)) (home-page "http://weizhongli-lab.org/cd-hit/") (synopsis "Cluster and compare protein or nucleotide sequences") (description |