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authorRicardo Wurmus <rekado@elephly.net>2019-04-02 15:10:51 +0200
committerRicardo Wurmus <rekado@elephly.net>2019-04-02 15:11:45 +0200
commitb4a33870f6a4d1929967ae6f2de404517cd65b8d (patch)
tree1fb3875515269849323b49f4eba85b7e9c3b4ff3 /gnu/packages/bioinformatics.scm
parent6ee48091a459f0fa48debe63d78cc1202d7fa95e (diff)
gnu: python-scanpy: Add python-louvain to inputs.
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Sort inputs and add python-louvain. [arguments]: Do not delete test that depends on louvain.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm14
1 files changed, 6 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8f6a37a4f8..020d2d56ea 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13301,9 +13301,6 @@ in RNA-seq data.")
(delete-file-recursively "scanpy/tests/notebooks")
(delete-file "scanpy/tests/test_clustering.py")
- ;; TODO: No module named 'louvain'
- (delete-file "scanpy/tests/test_rank_genes_groups_logreg.py")
-
;; TODO: I can't get the plotting tests to work, even with Xvfb.
(delete-file "scanpy/tests/test_plotting.py")
(delete-file "scanpy/tests/test_preprocessing.py")
@@ -13316,18 +13313,19 @@ in RNA-seq data.")
#t)))))
(propagated-inputs
`(("python-anndata" ,python-anndata)
+ ("python-h5py" ,python-h5py)
("python-igraph" ,python-igraph)
- ("python-numba" ,python-numba)
("python-joblib" ,python-joblib)
+ ("python-louvain" ,python-louvain)
+ ("python-matplotlib" ,python-matplotlib)
("python-natsort" ,python-natsort)
("python-networkx" ,python-networkx)
- ("python-statsmodels" ,python-statsmodels)
- ("python-scikit-learn" ,python-scikit-learn)
- ("python-matplotlib" ,python-matplotlib)
+ ("python-numba" ,python-numba)
("python-pandas" ,python-pandas)
+ ("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)
("python-seaborn" ,python-seaborn)
- ("python-h5py" ,python-h5py)
+ ("python-statsmodels" ,python-statsmodels)
("python-tables" ,python-tables)))
(native-inputs
`(("python-pytest" ,python-pytest)))