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authorRicardo Wurmus <rekado@elephly.net>2020-06-12 16:35:25 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-06-13 01:19:46 +0200
commit87d5444d9f0042b70d1bb865ce584a25977343e6 (patch)
tree6d5eb2067aa783074e10f704668f21001c3f7a14 /gnu/packages/bioinformatics.scm
parentcf907680e893896fd831409f329f06cf593a496c (diff)
gnu: r-rhdf5lib: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.0. [source]: Update snippet. [arguments]: Replace ZLIB variables in Makevars. [native-inputs]: Add r-knitr.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm14
1 files changed, 10 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ef81d20d2..ff815187c7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10868,19 +10868,22 @@ block processing.")
(define-public r-rhdf5lib
(package
(name "r-rhdf5lib")
- (version "1.8.0")
+ (version "1.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhdf5lib" version))
(sha256
(base32
- "17lhwnm9rqsvbqkvwp0m07vjrk63a4389p2y39zffv8fgznxqzd7"))
+ "09ylwyk6a8sdrmi1mx7vpycpykqlqylmwa973g6jrcmk0h0qfa4w"))
(modules '((guix build utils)))
(snippet
'(begin
;; Delete bundled binaries
- (delete-file-recursively "src/winlib/")
+ (delete-file-recursively "src/wininclude/")
+ (delete-file-recursively "src/winlib-4.9.3/")
+ (delete-file-recursively "src/winlib-8.3.0/")
+ (delete-file "src/hdf5small_cxx_hl_1.10.6.tar.gz")
#t))))
(properties `((upstream-name . "Rhdf5lib")))
(build-system r-build-system)
@@ -10916,6 +10919,8 @@ block processing.")
"C Compiler: GCC\n"))
(rename-file "Makevars.in" "Makevars")
(substitute* "Makevars"
+ (("@ZLIB_LIB@") "-lz")
+ (("@ZLIB_INCLUDE@") "")
(("HDF5_CXX_LIB=.*")
(string-append "HDF5_CXX_LIB="
(assoc-ref inputs "hdf5") "/lib/libhdf5_cpp.a\n"))
@@ -10941,7 +10946,8 @@ block processing.")
(propagated-inputs
`(("hdf5" ,hdf5-1.10)))
(native-inputs
- `(("hdf5-source" ,(package-source hdf5-1.10))))
+ `(("hdf5-source" ,(package-source hdf5-1.10))
+ ("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/Rhdf5lib")
(synopsis "HDF5 library as an R package")
(description "This package provides C and C++ HDF5 libraries for use in R