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authorPjotr Prins <pjotr.public12@thebird.nl>2015-09-14 16:32:27 +0200
committerDavid Thompson <dthompson2@worcester.edu>2015-09-14 11:36:30 -0400
commitb429c4fbb06299ce10ecc113a7818bf777c63a6e (patch)
tree0737210854c2c375108547668d9a03942218ceaf /gnu/packages/bioinformatics.scm
parent239db054a731a8e35ab239a025219a16bba2deb3 (diff)
gnu: Add bio-locus.
* gnu/packages/bioinformatics.scm (bio-locus): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 03eb2dfe30..c4ba0e082f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2616,3 +2616,27 @@ data in the form of VCF files.")
;; The license is declared as LGPLv3 in the README and
;; at http://vcftools.sourceforge.net/license.html
(license license:lgpl3)))
+
+(define-public bio-locus
+ (package
+ (name "bio-locus")
+ (version "0.0.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (rubygems-uri "bio-locus" version))
+ (sha256
+ (base32
+ "02vmrxyimkj9sahsp4zhfhnmbvz6dbbqz1y01vglf8cbwvkajfl0"))))
+ (build-system ruby-build-system)
+ (native-inputs
+ `(("ruby-rspec" ,ruby-rspec)))
+ (synopsis "Tool for fast querying of genome locations")
+ (description
+ "Bio-locus is a tabix-like tool for fast querying of genome
+locations. Many file formats in bioinformatics contain records that
+start with a chromosome name and a position for a SNP, or a start-end
+position for indels. Bio-locus allows users to store this chr+pos or
+chr+pos+alt information in a fast database.")
+ (home-page "https://github.com/pjotrp/bio-locus")
+ (license license:expat)))