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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2015-12-23 17:34:45 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-01-07 17:18:17 +0100
commit03ea5a357ecc8d821078cbbcfb038ee6eeb46898 (patch)
tree4c9b1c9901e7253114bb6869cf6d661aaf73dcdc /gnu/packages/bioinformatics.scm
parentc43a011de3c0155b4ccf3b02505fbce86d01b22e (diff)
gnu: Add seqPattern.
* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9224abda19..f574bde9e7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3886,6 +3886,32 @@ genome data packages and support for efficient SNP representation.")
microarray data, using nearest neighbor averaging.")
(license license:gpl2+)))
+(define-public r-seqpattern
+ (package
+ (name "r-seqpattern")
+ (version "1.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "seqPattern" version))
+ (sha256
+ (base32
+ "0p9zj6bic7sa0hb2bjm988kkk5n9r1kvlbqkzvy702f642n0j53i"))))
+ (properties
+ `((upstream-name . "seqPattern")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-plotrix" ,r-plotrix)))
+ (home-page "http://bioconductor.org/packages/seqPattern")
+ (synopsis "Visualising oligonucleotide patterns and motif occurrences")
+ (description
+ "This package provides tools to visualize oligonucleotide patterns and
+sequence motif occurrences across a large set of sequences centred at a common
+reference point and sorted by a user defined feature.")
+ (license license:gpl3+)))
+
(define-public r-qtl
(package
(name "r-qtl")